Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2543 and EX28DRAFT_2544 are separated by 148 nucleotides EX28DRAFT_2544 and EX28DRAFT_2545 are separated by 32 nucleotides EX28DRAFT_2545 and EX28DRAFT_2546 are separated by 121 nucleotides
EX28DRAFT_2543: EX28DRAFT_2543 - protoheme IX farnesyltransferase, at 2,575,529 to 2,576,416
_2543
EX28DRAFT_2544: EX28DRAFT_2544 - Arabinose efflux permease, at 2,576,565 to 2,577,926
_2544
EX28DRAFT_2545: EX28DRAFT_2545 - Uncharacterized protein conserved in bacteria, at 2,577,959 to 2,578,450
_2545
EX28DRAFT_2546: EX28DRAFT_2546 - 2-dehydropantoate 2-reductase, at 2,578,572 to 2,579,483
_2546
Position (kb)
2576
2577
2578 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 2575.642 kb on + strand, within EX28DRAFT_2543 at 2575.646 kb on + strand, within EX28DRAFT_2543 at 2575.647 kb on - strand, within EX28DRAFT_2543 at 2575.700 kb on + strand, within EX28DRAFT_2543 at 2575.701 kb on - strand, within EX28DRAFT_2543 at 2575.883 kb on + strand, within EX28DRAFT_2543 at 2575.883 kb on + strand, within EX28DRAFT_2543 at 2575.904 kb on + strand, within EX28DRAFT_2543 at 2575.904 kb on + strand, within EX28DRAFT_2543 at 2575.905 kb on - strand, within EX28DRAFT_2543 at 2576.222 kb on + strand, within EX28DRAFT_2543 at 2576.405 kb on + strand at 2576.406 kb on - strand at 2576.431 kb on + strand at 2576.431 kb on + strand at 2576.476 kb on + strand at 2576.477 kb on - strand at 2576.488 kb on + strand at 2576.489 kb on - strand at 2576.533 kb on - strand at 2576.538 kb on - strand at 2576.564 kb on - strand at 2576.575 kb on - strand at 2576.614 kb on + strand at 2576.677 kb on - strand at 2576.734 kb on - strand, within EX28DRAFT_2544 at 2577.038 kb on + strand, within EX28DRAFT_2544 at 2577.039 kb on - strand, within EX28DRAFT_2544 at 2577.166 kb on + strand, within EX28DRAFT_2544 at 2577.166 kb on + strand, within EX28DRAFT_2544 at 2577.167 kb on - strand, within EX28DRAFT_2544 at 2577.228 kb on - strand, within EX28DRAFT_2544 at 2577.591 kb on + strand, within EX28DRAFT_2544 at 2577.592 kb on - strand, within EX28DRAFT_2544 at 2577.741 kb on + strand, within EX28DRAFT_2544 at 2577.797 kb on + strand at 2577.798 kb on - strand at 2577.874 kb on + strand at 2577.874 kb on + strand at 2578.093 kb on + strand, within EX28DRAFT_2545 at 2578.093 kb on + strand, within EX28DRAFT_2545 at 2578.109 kb on - strand, within EX28DRAFT_2545 at 2578.109 kb on - strand, within EX28DRAFT_2545 at 2578.111 kb on + strand, within EX28DRAFT_2545 at 2578.111 kb on + strand, within EX28DRAFT_2545 at 2578.111 kb on + strand, within EX28DRAFT_2545 at 2578.112 kb on - strand, within EX28DRAFT_2545 at 2578.112 kb on - strand, within EX28DRAFT_2545 at 2578.307 kb on - strand, within EX28DRAFT_2545 at 2578.484 kb on + strand at 2578.519 kb on + strand at 2578.525 kb on + strand at 2578.526 kb on - strand at 2578.527 kb on + strand at 2578.528 kb on - strand at 2578.531 kb on + strand at 2578.531 kb on + strand at 2578.532 kb on - strand at 2578.678 kb on - strand, within EX28DRAFT_2546 at 2578.772 kb on - strand, within EX28DRAFT_2546
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,575,642 + EX28DRAFT_2543 0.13 -0.6 2,575,646 + EX28DRAFT_2543 0.13 +0.7 2,575,647 - EX28DRAFT_2543 0.13 +1.0 2,575,700 + EX28DRAFT_2543 0.19 +0.3 2,575,701 - EX28DRAFT_2543 0.19 +0.6 2,575,883 + EX28DRAFT_2543 0.40 +0.1 2,575,883 + EX28DRAFT_2543 0.40 +0.7 2,575,904 + EX28DRAFT_2543 0.42 +0.9 2,575,904 + EX28DRAFT_2543 0.42 +1.1 2,575,905 - EX28DRAFT_2543 0.42 +1.4 2,576,222 + EX28DRAFT_2543 0.78 +0.4 2,576,405 + +0.5 2,576,406 - -0.5 2,576,431 + -0.9 2,576,431 + +0.5 2,576,476 + +0.1 2,576,477 - +0.2 2,576,488 + -0.2 2,576,489 - -0.0 2,576,533 - +0.2 2,576,538 - -0.2 2,576,564 - +0.4 2,576,575 - -0.1 2,576,614 + -0.1 2,576,677 - +0.4 2,576,734 - EX28DRAFT_2544 0.12 +0.3 2,577,038 + EX28DRAFT_2544 0.35 -0.2 2,577,039 - EX28DRAFT_2544 0.35 -0.8 2,577,166 + EX28DRAFT_2544 0.44 +1.9 2,577,166 + EX28DRAFT_2544 0.44 +2.2 2,577,167 - EX28DRAFT_2544 0.44 -0.5 2,577,228 - EX28DRAFT_2544 0.49 +1.1 2,577,591 + EX28DRAFT_2544 0.75 +0.1 2,577,592 - EX28DRAFT_2544 0.75 +0.7 2,577,741 + EX28DRAFT_2544 0.86 +0.6 2,577,797 + -0.6 2,577,798 - +0.9 2,577,874 + +0.3 2,577,874 + +1.9 2,578,093 + EX28DRAFT_2545 0.27 -0.2 2,578,093 + EX28DRAFT_2545 0.27 -0.6 2,578,109 - EX28DRAFT_2545 0.30 -0.6 2,578,109 - EX28DRAFT_2545 0.30 -1.2 2,578,111 + EX28DRAFT_2545 0.31 -3.7 2,578,111 + EX28DRAFT_2545 0.31 -0.1 2,578,111 + EX28DRAFT_2545 0.31 -0.0 2,578,112 - EX28DRAFT_2545 0.31 -0.0 2,578,112 - EX28DRAFT_2545 0.31 -0.2 2,578,307 - EX28DRAFT_2545 0.71 -0.4 2,578,484 + -1.6 2,578,519 + -0.6 2,578,525 + -0.6 2,578,526 - +0.2 2,578,527 + -0.1 2,578,528 - +0.2 2,578,531 + -0.5 2,578,531 + -2.3 2,578,532 - +0.3 2,578,678 - EX28DRAFT_2546 0.12 -0.3 2,578,772 - EX28DRAFT_2546 0.22 +0.1
Or see this region's nucleotide sequence