Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1970 and EX28DRAFT_1971 are separated by 316 nucleotides EX28DRAFT_1971 and EX28DRAFT_1972 are separated by 69 nucleotides EX28DRAFT_1972 and EX28DRAFT_1973 overlap by 4 nucleotides EX28DRAFT_1973 and EX28DRAFT_1974 are separated by 11 nucleotides
EX28DRAFT_1970: EX28DRAFT_1970 - CblD like pilus biogenesis initiator, at 1,973,760 to 1,974,917
_1970
EX28DRAFT_1971: EX28DRAFT_1971 - Bacterial regulatory proteins, luxR family, at 1,975,234 to 1,975,479
_1971
EX28DRAFT_1972: EX28DRAFT_1972 - sulfur relay protein, TusE/DsrC/DsvC family, at 1,975,549 to 1,975,878
_1972
EX28DRAFT_1973: EX28DRAFT_1973 - Acylphosphatases, at 1,975,875 to 1,976,156
_1973
EX28DRAFT_1974: EX28DRAFT_1974 - AraC-type DNA-binding domain-containing proteins, at 1,976,168 to 1,976,956
_1974
Position (kb) 1975
1976 Strain fitness (log2 ratio) -1
0
1 at 1974.270 kb on - strand, within EX28DRAFT_1970 at 1974.325 kb on + strand, within EX28DRAFT_1970 at 1974.325 kb on + strand, within EX28DRAFT_1970 at 1974.326 kb on - strand, within EX28DRAFT_1970 at 1974.326 kb on - strand, within EX28DRAFT_1970 at 1974.518 kb on + strand, within EX28DRAFT_1970 at 1974.518 kb on + strand, within EX28DRAFT_1970 at 1974.519 kb on - strand, within EX28DRAFT_1970 at 1974.537 kb on - strand, within EX28DRAFT_1970 at 1974.540 kb on - strand, within EX28DRAFT_1970 at 1974.762 kb on + strand, within EX28DRAFT_1970 at 1974.802 kb on + strand at 1974.873 kb on + strand at 1974.897 kb on + strand at 1974.897 kb on + strand at 1974.897 kb on + strand at 1974.897 kb on + strand at 1974.898 kb on - strand at 1974.898 kb on - strand at 1974.913 kb on + strand at 1974.914 kb on - strand at 1974.918 kb on - strand at 1975.050 kb on + strand at 1975.202 kb on + strand at 1975.270 kb on + strand, within EX28DRAFT_1971 at 1975.395 kb on + strand, within EX28DRAFT_1971 at 1975.396 kb on - strand, within EX28DRAFT_1971 at 1975.396 kb on - strand, within EX28DRAFT_1971 at 1975.422 kb on + strand, within EX28DRAFT_1971 at 1975.478 kb on - strand at 1975.548 kb on + strand at 1975.877 kb on - strand at 1975.896 kb on + strand at 1975.897 kb on - strand at 1975.937 kb on + strand, within EX28DRAFT_1973 at 1976.043 kb on - strand, within EX28DRAFT_1973 at 1976.043 kb on - strand, within EX28DRAFT_1973 at 1976.043 kb on - strand, within EX28DRAFT_1973 at 1976.043 kb on - strand, within EX28DRAFT_1973 at 1976.196 kb on + strand at 1976.197 kb on - strand at 1976.249 kb on + strand, within EX28DRAFT_1974 at 1976.250 kb on - strand, within EX28DRAFT_1974 at 1976.250 kb on - strand, within EX28DRAFT_1974 at 1976.250 kb on - strand, within EX28DRAFT_1974 at 1976.354 kb on + strand, within EX28DRAFT_1974 at 1976.437 kb on + strand, within EX28DRAFT_1974
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,974,270 - EX28DRAFT_1970 0.44 +0.3 1,974,325 + EX28DRAFT_1970 0.49 +0.5 1,974,325 + EX28DRAFT_1970 0.49 -1.3 1,974,326 - EX28DRAFT_1970 0.49 -0.4 1,974,326 - EX28DRAFT_1970 0.49 +0.2 1,974,518 + EX28DRAFT_1970 0.65 +0.2 1,974,518 + EX28DRAFT_1970 0.65 -0.3 1,974,519 - EX28DRAFT_1970 0.66 -0.4 1,974,537 - EX28DRAFT_1970 0.67 -0.3 1,974,540 - EX28DRAFT_1970 0.67 -0.4 1,974,762 + EX28DRAFT_1970 0.87 +0.1 1,974,802 + -0.1 1,974,873 + -1.7 1,974,897 + +0.3 1,974,897 + -0.2 1,974,897 + +1.3 1,974,897 + +0.7 1,974,898 - -0.7 1,974,898 - +0.1 1,974,913 + +0.6 1,974,914 - -1.3 1,974,918 - +0.4 1,975,050 + -0.5 1,975,202 + +0.6 1,975,270 + EX28DRAFT_1971 0.15 -0.3 1,975,395 + EX28DRAFT_1971 0.65 -1.2 1,975,396 - EX28DRAFT_1971 0.66 -0.9 1,975,396 - EX28DRAFT_1971 0.66 -0.1 1,975,422 + EX28DRAFT_1971 0.76 -0.6 1,975,478 - +0.4 1,975,548 + +0.8 1,975,877 - +0.1 1,975,896 + +0.5 1,975,897 - +0.6 1,975,937 + EX28DRAFT_1973 0.22 +0.3 1,976,043 - EX28DRAFT_1973 0.60 -1.2 1,976,043 - EX28DRAFT_1973 0.60 -0.4 1,976,043 - EX28DRAFT_1973 0.60 +0.2 1,976,043 - EX28DRAFT_1973 0.60 +0.6 1,976,196 + +0.1 1,976,197 - +0.6 1,976,249 + EX28DRAFT_1974 0.10 -0.6 1,976,250 - EX28DRAFT_1974 0.10 +0.1 1,976,250 - EX28DRAFT_1974 0.10 -0.6 1,976,250 - EX28DRAFT_1974 0.10 -0.5 1,976,354 + EX28DRAFT_1974 0.24 +1.0 1,976,437 + EX28DRAFT_1974 0.34 +0.1
Or see this region's nucleotide sequence