Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1894

Experiment: MS_media with arsenate 5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1892 and EX28DRAFT_1893 are separated by 43 nucleotidesEX28DRAFT_1893 and EX28DRAFT_1894 are separated by 90 nucleotidesEX28DRAFT_1894 and EX28DRAFT_1895 are separated by 21 nucleotidesEX28DRAFT_1895 and EX28DRAFT_1896 are separated by 84 nucleotides EX28DRAFT_1892: EX28DRAFT_1892 - Uncharacterized protein involved in formation of curli polymers, at 1,902,312 to 1,903,145 _1892 EX28DRAFT_1893: EX28DRAFT_1893 - Protein of unknown function (DUF1097), at 1,903,189 to 1,903,680 _1893 EX28DRAFT_1894: EX28DRAFT_1894 - Uncharacterized component of anaerobic dehydrogenases, at 1,903,771 to 1,904,322 _1894 EX28DRAFT_1895: EX28DRAFT_1895 - Histidinol phosphatase and related hydrolases of the PHP family, at 1,904,344 to 1,905,081 _1895 EX28DRAFT_1896: EX28DRAFT_1896 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 1,905,166 to 1,906,104 _1896 Position (kb) 1903 1904 1905Strain fitness (log2 ratio) -1 0 1at 1902.857 kb on + strand, within EX28DRAFT_1892at 1903.033 kb on - strand, within EX28DRAFT_1892at 1903.036 kb on + strand, within EX28DRAFT_1892at 1903.037 kb on - strand, within EX28DRAFT_1892at 1903.049 kb on + strand, within EX28DRAFT_1892at 1903.051 kb on + strand, within EX28DRAFT_1892at 1903.051 kb on + strand, within EX28DRAFT_1892at 1903.052 kb on - strand, within EX28DRAFT_1892at 1903.175 kb on + strandat 1903.244 kb on - strand, within EX28DRAFT_1893at 1903.301 kb on - strand, within EX28DRAFT_1893at 1903.347 kb on + strand, within EX28DRAFT_1893at 1903.428 kb on - strand, within EX28DRAFT_1893at 1903.489 kb on - strand, within EX28DRAFT_1893at 1903.518 kb on + strand, within EX28DRAFT_1893at 1903.519 kb on - strand, within EX28DRAFT_1893at 1903.660 kb on + strandat 1903.661 kb on - strandat 1903.661 kb on - strandat 1903.661 kb on - strandat 1903.661 kb on - strandat 1903.661 kb on - strandat 1903.661 kb on - strandat 1903.663 kb on + strandat 1903.684 kb on - strandat 1904.234 kb on - strand, within EX28DRAFT_1894at 1904.279 kb on + strandat 1904.279 kb on + strandat 1904.280 kb on - strandat 1904.345 kb on + strandat 1904.416 kb on + strandat 1904.446 kb on - strand, within EX28DRAFT_1895at 1904.446 kb on - strand, within EX28DRAFT_1895at 1904.608 kb on - strand, within EX28DRAFT_1895at 1904.608 kb on - strand, within EX28DRAFT_1895at 1904.985 kb on + strand, within EX28DRAFT_1895at 1904.985 kb on + strand, within EX28DRAFT_1895at 1904.994 kb on + strand, within EX28DRAFT_1895at 1905.014 kb on + strandat 1905.015 kb on - strandat 1905.015 kb on - strandat 1905.032 kb on + strandat 1905.032 kb on + strandat 1905.061 kb on - strandat 1905.061 kb on - strandat 1905.077 kb on + strandat 1905.136 kb on - strandat 1905.238 kb on + strandat 1905.239 kb on - strandat 1905.240 kb on + strandat 1905.240 kb on + strandat 1905.241 kb on - strandat 1905.241 kb on - strandat 1905.241 kb on - strandat 1905.241 kb on - strandat 1905.241 kb on - strandat 1905.241 kb on - strandat 1905.242 kb on + strandat 1905.242 kb on + strandat 1905.242 kb on + strandat 1905.242 kb on + strandat 1905.242 kb on + strandat 1905.242 kb on + strandat 1905.243 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM
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1,902,857 + EX28DRAFT_1892 0.65 -1.2
1,903,033 - EX28DRAFT_1892 0.86 -0.1
1,903,036 + EX28DRAFT_1892 0.87 +0.9
1,903,037 - EX28DRAFT_1892 0.87 +0.1
1,903,049 + EX28DRAFT_1892 0.88 +0.5
1,903,051 + EX28DRAFT_1892 0.89 -0.3
1,903,051 + EX28DRAFT_1892 0.89 -0.3
1,903,052 - EX28DRAFT_1892 0.89 -0.3
1,903,175 + -0.6
1,903,244 - EX28DRAFT_1893 0.11 -0.4
1,903,301 - EX28DRAFT_1893 0.23 +0.2
1,903,347 + EX28DRAFT_1893 0.32 -1.1
1,903,428 - EX28DRAFT_1893 0.49 -0.3
1,903,489 - EX28DRAFT_1893 0.61 -0.0
1,903,518 + EX28DRAFT_1893 0.67 +0.5
1,903,519 - EX28DRAFT_1893 0.67 -0.6
1,903,660 + -1.2
1,903,661 - -0.1
1,903,661 - -1.7
1,903,661 - +0.3
1,903,661 - -0.2
1,903,661 - +0.0
1,903,661 - +0.2
1,903,663 + -1.4
1,903,684 - -0.4
1,904,234 - EX28DRAFT_1894 0.84 +1.0
1,904,279 + +0.6
1,904,279 + +0.2
1,904,280 - -1.4
1,904,345 + +0.7
1,904,416 + -0.7
1,904,446 - EX28DRAFT_1895 0.14 -0.4
1,904,446 - EX28DRAFT_1895 0.14 +0.5
1,904,608 - EX28DRAFT_1895 0.36 +0.8
1,904,608 - EX28DRAFT_1895 0.36 +0.5
1,904,985 + EX28DRAFT_1895 0.87 +0.7
1,904,985 + EX28DRAFT_1895 0.87 -0.3
1,904,994 + EX28DRAFT_1895 0.88 -0.3
1,905,014 + +0.3
1,905,015 - +0.6
1,905,015 - +0.3
1,905,032 + -0.7
1,905,032 + -0.3
1,905,061 - -0.1
1,905,061 - -1.7
1,905,077 + -0.1
1,905,136 - +0.8
1,905,238 + +0.8
1,905,239 - -0.6
1,905,240 + +0.4
1,905,240 + -1.7
1,905,241 - +0.1
1,905,241 - -0.2
1,905,241 - +0.7
1,905,241 - +0.5
1,905,241 - -0.0
1,905,241 - -0.5
1,905,242 + +1.1
1,905,242 + -0.2
1,905,242 + +0.0
1,905,242 + +0.2
1,905,242 + -0.1
1,905,242 + +0.4
1,905,243 - +0.0

Or see this region's nucleotide sequence