Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1892 and EX28DRAFT_1893 are separated by 43 nucleotides EX28DRAFT_1893 and EX28DRAFT_1894 are separated by 90 nucleotides EX28DRAFT_1894 and EX28DRAFT_1895 are separated by 21 nucleotides EX28DRAFT_1895 and EX28DRAFT_1896 are separated by 84 nucleotides
EX28DRAFT_1892: EX28DRAFT_1892 - Uncharacterized protein involved in formation of curli polymers, at 1,902,312 to 1,903,145
_1892
EX28DRAFT_1893: EX28DRAFT_1893 - Protein of unknown function (DUF1097), at 1,903,189 to 1,903,680
_1893
EX28DRAFT_1894: EX28DRAFT_1894 - Uncharacterized component of anaerobic dehydrogenases, at 1,903,771 to 1,904,322
_1894
EX28DRAFT_1895: EX28DRAFT_1895 - Histidinol phosphatase and related hydrolases of the PHP family, at 1,904,344 to 1,905,081
_1895
EX28DRAFT_1896: EX28DRAFT_1896 - Phosphoglycerate dehydrogenase and related dehydrogenases, at 1,905,166 to 1,906,104
_1896
Position (kb)
1903
1904
1905 Strain fitness (log2 ratio)
-1
0
1 at 1902.857 kb on + strand, within EX28DRAFT_1892 at 1903.033 kb on - strand, within EX28DRAFT_1892 at 1903.036 kb on + strand, within EX28DRAFT_1892 at 1903.037 kb on - strand, within EX28DRAFT_1892 at 1903.049 kb on + strand, within EX28DRAFT_1892 at 1903.051 kb on + strand, within EX28DRAFT_1892 at 1903.051 kb on + strand, within EX28DRAFT_1892 at 1903.052 kb on - strand, within EX28DRAFT_1892 at 1903.175 kb on + strand at 1903.244 kb on - strand, within EX28DRAFT_1893 at 1903.301 kb on - strand, within EX28DRAFT_1893 at 1903.347 kb on + strand, within EX28DRAFT_1893 at 1903.428 kb on - strand, within EX28DRAFT_1893 at 1903.489 kb on - strand, within EX28DRAFT_1893 at 1903.518 kb on + strand, within EX28DRAFT_1893 at 1903.519 kb on - strand, within EX28DRAFT_1893 at 1903.660 kb on + strand at 1903.661 kb on - strand at 1903.661 kb on - strand at 1903.661 kb on - strand at 1903.661 kb on - strand at 1903.661 kb on - strand at 1903.661 kb on - strand at 1903.663 kb on + strand at 1903.684 kb on - strand at 1904.234 kb on - strand, within EX28DRAFT_1894 at 1904.279 kb on + strand at 1904.279 kb on + strand at 1904.280 kb on - strand at 1904.345 kb on + strand at 1904.416 kb on + strand at 1904.446 kb on - strand, within EX28DRAFT_1895 at 1904.446 kb on - strand, within EX28DRAFT_1895 at 1904.608 kb on - strand, within EX28DRAFT_1895 at 1904.608 kb on - strand, within EX28DRAFT_1895 at 1904.985 kb on + strand, within EX28DRAFT_1895 at 1904.985 kb on + strand, within EX28DRAFT_1895 at 1904.994 kb on + strand, within EX28DRAFT_1895 at 1905.014 kb on + strand at 1905.015 kb on - strand at 1905.015 kb on - strand at 1905.032 kb on + strand at 1905.032 kb on + strand at 1905.061 kb on - strand at 1905.061 kb on - strand at 1905.077 kb on + strand at 1905.136 kb on - strand at 1905.238 kb on + strand at 1905.239 kb on - strand at 1905.240 kb on + strand at 1905.240 kb on + strand at 1905.241 kb on - strand at 1905.241 kb on - strand at 1905.241 kb on - strand at 1905.241 kb on - strand at 1905.241 kb on - strand at 1905.241 kb on - strand at 1905.242 kb on + strand at 1905.242 kb on + strand at 1905.242 kb on + strand at 1905.242 kb on + strand at 1905.242 kb on + strand at 1905.242 kb on + strand at 1905.243 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,902,857 + EX28DRAFT_1892 0.65 -1.2 1,903,033 - EX28DRAFT_1892 0.86 -0.1 1,903,036 + EX28DRAFT_1892 0.87 +0.9 1,903,037 - EX28DRAFT_1892 0.87 +0.1 1,903,049 + EX28DRAFT_1892 0.88 +0.5 1,903,051 + EX28DRAFT_1892 0.89 -0.3 1,903,051 + EX28DRAFT_1892 0.89 -0.3 1,903,052 - EX28DRAFT_1892 0.89 -0.3 1,903,175 + -0.6 1,903,244 - EX28DRAFT_1893 0.11 -0.4 1,903,301 - EX28DRAFT_1893 0.23 +0.2 1,903,347 + EX28DRAFT_1893 0.32 -1.1 1,903,428 - EX28DRAFT_1893 0.49 -0.3 1,903,489 - EX28DRAFT_1893 0.61 -0.0 1,903,518 + EX28DRAFT_1893 0.67 +0.5 1,903,519 - EX28DRAFT_1893 0.67 -0.6 1,903,660 + -1.2 1,903,661 - -0.1 1,903,661 - -1.7 1,903,661 - +0.3 1,903,661 - -0.2 1,903,661 - +0.0 1,903,661 - +0.2 1,903,663 + -1.4 1,903,684 - -0.4 1,904,234 - EX28DRAFT_1894 0.84 +1.0 1,904,279 + +0.6 1,904,279 + +0.2 1,904,280 - -1.4 1,904,345 + +0.7 1,904,416 + -0.7 1,904,446 - EX28DRAFT_1895 0.14 -0.4 1,904,446 - EX28DRAFT_1895 0.14 +0.5 1,904,608 - EX28DRAFT_1895 0.36 +0.8 1,904,608 - EX28DRAFT_1895 0.36 +0.5 1,904,985 + EX28DRAFT_1895 0.87 +0.7 1,904,985 + EX28DRAFT_1895 0.87 -0.3 1,904,994 + EX28DRAFT_1895 0.88 -0.3 1,905,014 + +0.3 1,905,015 - +0.6 1,905,015 - +0.3 1,905,032 + -0.7 1,905,032 + -0.3 1,905,061 - -0.1 1,905,061 - -1.7 1,905,077 + -0.1 1,905,136 - +0.8 1,905,238 + +0.8 1,905,239 - -0.6 1,905,240 + +0.4 1,905,240 + -1.7 1,905,241 - +0.1 1,905,241 - -0.2 1,905,241 - +0.7 1,905,241 - +0.5 1,905,241 - -0.0 1,905,241 - -0.5 1,905,242 + +1.1 1,905,242 + -0.2 1,905,242 + +0.0 1,905,242 + +0.2 1,905,242 + -0.1 1,905,242 + +0.4 1,905,243 - +0.0
Or see this region's nucleotide sequence