Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_0146 and EX28DRAFT_0147 are separated by 292 nucleotides EX28DRAFT_0147 and EX28DRAFT_0148 are separated by 11 nucleotides
EX28DRAFT_0146: EX28DRAFT_0146 - transcriptional regulator, RpiR family, at 89,976 to 90,809
_0146
EX28DRAFT_0147: EX28DRAFT_0147 - methylmalonic acid semialdehyde dehydrogenase, at 91,102 to 92,607
_0147
EX28DRAFT_0148: EX28DRAFT_0148 - Acetolactate synthase, at 92,619 to 94,544
_0148
Position (kb) 91
92
93 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 90.320 kb on - strand, within EX28DRAFT_0146 at 90.329 kb on - strand, within EX28DRAFT_0146 at 90.341 kb on + strand, within EX28DRAFT_0146 at 90.367 kb on + strand, within EX28DRAFT_0146 at 90.367 kb on + strand, within EX28DRAFT_0146 at 90.367 kb on + strand, within EX28DRAFT_0146 at 90.368 kb on - strand, within EX28DRAFT_0146 at 90.547 kb on + strand, within EX28DRAFT_0146 at 90.832 kb on - strand at 91.054 kb on + strand at 91.080 kb on + strand at 91.080 kb on + strand at 91.215 kb on + strand at 91.215 kb on + strand at 91.802 kb on - strand, within EX28DRAFT_0147 at 91.977 kb on + strand, within EX28DRAFT_0147 at 92.113 kb on + strand, within EX28DRAFT_0147 at 92.195 kb on - strand, within EX28DRAFT_0147 at 92.195 kb on - strand, within EX28DRAFT_0147 at 92.245 kb on + strand, within EX28DRAFT_0147 at 92.245 kb on + strand, within EX28DRAFT_0147 at 92.246 kb on - strand, within EX28DRAFT_0147 at 92.246 kb on - strand, within EX28DRAFT_0147 at 92.332 kb on + strand, within EX28DRAFT_0147 at 92.332 kb on + strand, within EX28DRAFT_0147 at 92.332 kb on + strand, within EX28DRAFT_0147 at 92.333 kb on - strand, within EX28DRAFT_0147 at 92.618 kb on + strand at 92.633 kb on + strand at 92.634 kb on - strand at 92.676 kb on + strand at 92.677 kb on - strand at 92.828 kb on + strand, within EX28DRAFT_0148 at 92.910 kb on - strand, within EX28DRAFT_0148 at 92.976 kb on + strand, within EX28DRAFT_0148 at 92.977 kb on - strand, within EX28DRAFT_0148 at 93.022 kb on - strand, within EX28DRAFT_0148 at 93.022 kb on - strand, within EX28DRAFT_0148 at 93.137 kb on + strand, within EX28DRAFT_0148 at 93.138 kb on - strand, within EX28DRAFT_0148 at 93.430 kb on + strand, within EX28DRAFT_0148 at 93.430 kb on + strand, within EX28DRAFT_0148 at 93.447 kb on - strand, within EX28DRAFT_0148 at 93.545 kb on + strand, within EX28DRAFT_0148 at 93.546 kb on - strand, within EX28DRAFT_0148
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 90,320 - EX28DRAFT_0146 0.41 -0.7 90,329 - EX28DRAFT_0146 0.42 +0.0 90,341 + EX28DRAFT_0146 0.44 -0.1 90,367 + EX28DRAFT_0146 0.47 -1.0 90,367 + EX28DRAFT_0146 0.47 -1.0 90,367 + EX28DRAFT_0146 0.47 -1.3 90,368 - EX28DRAFT_0146 0.47 -1.2 90,547 + EX28DRAFT_0146 0.68 -4.3 90,832 - +0.8 91,054 + +0.3 91,080 + +0.9 91,080 + +0.0 91,215 + -0.8 91,215 + +0.6 91,802 - EX28DRAFT_0147 0.46 -0.3 91,977 + EX28DRAFT_0147 0.58 +0.3 92,113 + EX28DRAFT_0147 0.67 +0.0 92,195 - EX28DRAFT_0147 0.73 +0.6 92,195 - EX28DRAFT_0147 0.73 -1.0 92,245 + EX28DRAFT_0147 0.76 +0.9 92,245 + EX28DRAFT_0147 0.76 -1.6 92,246 - EX28DRAFT_0147 0.76 +0.6 92,246 - EX28DRAFT_0147 0.76 +1.1 92,332 + EX28DRAFT_0147 0.82 +0.2 92,332 + EX28DRAFT_0147 0.82 +0.4 92,332 + EX28DRAFT_0147 0.82 -0.0 92,333 - EX28DRAFT_0147 0.82 -0.7 92,618 + +0.7 92,633 + -0.6 92,634 - -1.5 92,676 + -0.3 92,677 - +0.5 92,828 + EX28DRAFT_0148 0.11 -1.8 92,910 - EX28DRAFT_0148 0.15 +0.4 92,976 + EX28DRAFT_0148 0.19 -0.4 92,977 - EX28DRAFT_0148 0.19 +0.2 93,022 - EX28DRAFT_0148 0.21 +0.1 93,022 - EX28DRAFT_0148 0.21 -1.2 93,137 + EX28DRAFT_0148 0.27 +0.3 93,138 - EX28DRAFT_0148 0.27 -0.0 93,430 + EX28DRAFT_0148 0.42 -0.2 93,430 + EX28DRAFT_0148 0.42 +0.9 93,447 - EX28DRAFT_0148 0.43 +0.4 93,545 + EX28DRAFT_0148 0.48 +0.0 93,546 - EX28DRAFT_0148 0.48 +0.4
Or see this region's nucleotide sequence