Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30730 and ABIE40_RS30735 are separated by 158 nucleotides
ABIE40_RS30730: ABIE40_RS30730 - NADH-quinone oxidoreductase subunit D, at 834,194 to 835,381
_RS30730
ABIE40_RS30735: ABIE40_RS30735 - ATP-binding cassette domain-containing protein, at 835,540 to 836,031
_RS30735
Position (kb) 835
836
837 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 834.558 kb on + strand, within ABIE40_RS30730 at 834.618 kb on - strand, within ABIE40_RS30730 at 834.653 kb on + strand, within ABIE40_RS30730 at 834.908 kb on + strand, within ABIE40_RS30730 at 834.931 kb on - strand, within ABIE40_RS30730 at 834.956 kb on + strand, within ABIE40_RS30730 at 835.020 kb on + strand, within ABIE40_RS30730 at 835.077 kb on + strand, within ABIE40_RS30730 at 835.077 kb on + strand, within ABIE40_RS30730 at 835.078 kb on - strand, within ABIE40_RS30730 at 835.135 kb on + strand, within ABIE40_RS30730 at 835.136 kb on - strand, within ABIE40_RS30730 at 835.142 kb on + strand, within ABIE40_RS30730 at 835.143 kb on - strand, within ABIE40_RS30730 at 835.178 kb on + strand, within ABIE40_RS30730 at 835.178 kb on + strand, within ABIE40_RS30730 at 835.178 kb on + strand, within ABIE40_RS30730 at 835.178 kb on + strand, within ABIE40_RS30730 at 835.178 kb on + strand, within ABIE40_RS30730 at 835.178 kb on + strand, within ABIE40_RS30730 at 835.178 kb on + strand, within ABIE40_RS30730 at 835.179 kb on - strand, within ABIE40_RS30730 at 835.179 kb on - strand, within ABIE40_RS30730 at 835.198 kb on + strand, within ABIE40_RS30730 at 835.199 kb on - strand, within ABIE40_RS30730 at 835.215 kb on + strand, within ABIE40_RS30730 at 835.215 kb on + strand, within ABIE40_RS30730 at 835.216 kb on - strand, within ABIE40_RS30730 at 835.217 kb on + strand, within ABIE40_RS30730 at 835.218 kb on - strand, within ABIE40_RS30730 at 835.261 kb on - strand, within ABIE40_RS30730 at 835.276 kb on + strand at 835.276 kb on + strand at 835.327 kb on + strand at 835.431 kb on + strand at 835.432 kb on - strand at 835.437 kb on + strand at 835.437 kb on + strand at 835.437 kb on + strand at 835.437 kb on + strand at 835.438 kb on - strand at 835.438 kb on - strand at 835.740 kb on + strand, within ABIE40_RS30735 at 835.741 kb on - strand, within ABIE40_RS30735 at 835.741 kb on - strand, within ABIE40_RS30735 at 835.764 kb on - strand, within ABIE40_RS30735 at 835.771 kb on + strand, within ABIE40_RS30735 at 835.771 kb on + strand, within ABIE40_RS30735 at 835.969 kb on + strand, within ABIE40_RS30735 at 836.009 kb on + strand at 836.009 kb on + strand at 836.010 kb on - strand at 836.087 kb on + strand at 836.088 kb on - strand at 836.141 kb on + strand at 836.281 kb on + strand at 836.282 kb on - strand at 836.305 kb on + strand at 836.409 kb on - strand at 836.424 kb on - strand at 836.431 kb on - strand at 836.431 kb on - strand at 836.471 kb on + strand at 836.493 kb on + strand at 836.554 kb on + strand at 836.591 kb on + strand at 836.592 kb on - strand at 836.719 kb on + strand at 836.719 kb on + strand at 836.719 kb on + strand at 836.720 kb on - strand at 836.792 kb on - strand at 836.826 kb on + strand at 836.827 kb on - strand at 836.827 kb on - strand at 836.827 kb on - strand at 836.936 kb on - strand at 836.936 kb on - strand at 837.030 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 834,558 + ABIE40_RS30730 0.31 -2.7 834,618 - ABIE40_RS30730 0.36 -2.4 834,653 + ABIE40_RS30730 0.39 -1.0 834,908 + ABIE40_RS30730 0.60 -1.6 834,931 - ABIE40_RS30730 0.62 +0.0 834,956 + ABIE40_RS30730 0.64 +1.6 835,020 + ABIE40_RS30730 0.70 -2.2 835,077 + ABIE40_RS30730 0.74 -0.5 835,077 + ABIE40_RS30730 0.74 -0.4 835,078 - ABIE40_RS30730 0.74 -0.6 835,135 + ABIE40_RS30730 0.79 +0.3 835,136 - ABIE40_RS30730 0.79 +1.1 835,142 + ABIE40_RS30730 0.80 -1.2 835,143 - ABIE40_RS30730 0.80 -1.6 835,178 + ABIE40_RS30730 0.83 +1.1 835,178 + ABIE40_RS30730 0.83 -0.5 835,178 + ABIE40_RS30730 0.83 +0.6 835,178 + ABIE40_RS30730 0.83 +1.3 835,178 + ABIE40_RS30730 0.83 -1.0 835,178 + ABIE40_RS30730 0.83 +0.3 835,178 + ABIE40_RS30730 0.83 -0.6 835,179 - ABIE40_RS30730 0.83 -0.7 835,179 - ABIE40_RS30730 0.83 -0.3 835,198 + ABIE40_RS30730 0.85 -0.9 835,199 - ABIE40_RS30730 0.85 +1.3 835,215 + ABIE40_RS30730 0.86 -0.8 835,215 + ABIE40_RS30730 0.86 -0.6 835,216 - ABIE40_RS30730 0.86 -2.0 835,217 + ABIE40_RS30730 0.86 -1.5 835,218 - ABIE40_RS30730 0.86 -2.2 835,261 - ABIE40_RS30730 0.90 -0.9 835,276 + +0.7 835,276 + -2.6 835,327 + -0.8 835,431 + +3.4 835,432 - +0.8 835,437 + +0.3 835,437 + -0.0 835,437 + +1.6 835,437 + +0.9 835,438 - +0.7 835,438 - -0.7 835,740 + ABIE40_RS30735 0.41 -1.0 835,741 - ABIE40_RS30735 0.41 -4.5 835,741 - ABIE40_RS30735 0.41 -0.3 835,764 - ABIE40_RS30735 0.46 -1.4 835,771 + ABIE40_RS30735 0.47 -0.2 835,771 + ABIE40_RS30735 0.47 -1.2 835,969 + ABIE40_RS30735 0.87 -2.5 836,009 + -0.4 836,009 + -1.6 836,010 - +2.3 836,087 + -4.0 836,088 - +1.3 836,141 + +1.2 836,281 + -0.3 836,282 - -1.2 836,305 + -1.0 836,409 - -2.6 836,424 - -0.7 836,431 - -1.1 836,431 - +1.1 836,471 + -0.3 836,493 + +2.3 836,554 + +1.5 836,591 + +0.0 836,592 - -1.8 836,719 + -0.1 836,719 + +0.1 836,719 + -1.8 836,720 - +1.1 836,792 - +1.3 836,826 + -0.6 836,827 - -0.1 836,827 - -1.8 836,827 - -0.8 836,936 - -0.2 836,936 - +0.5 837,030 + -0.2
Or see this region's nucleotide sequence