Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS30215 and ABIE40_RS30220 are separated by 78 nucleotides ABIE40_RS30220 and ABIE40_RS30225 are separated by 141 nucleotides ABIE40_RS30225 and ABIE40_RS30230 are separated by 190 nucleotides ABIE40_RS30230 and ABIE40_RS30235 are separated by 356 nucleotides
ABIE40_RS30215: ABIE40_RS30215 - DUF1932 domain-containing protein, at 733,783 to 734,544
_RS30215
ABIE40_RS30220: ABIE40_RS30220 - hypothetical protein, at 734,623 to 734,829
_RS30220
ABIE40_RS30225: ABIE40_RS30225 - hypothetical protein, at 734,971 to 735,228
_RS30225
ABIE40_RS30230: ABIE40_RS30230 - CsbD family protein, at 735,419 to 735,610
_RS30230
ABIE40_RS30235: ABIE40_RS30235 - cupin, at 735,967 to 736,455
_RS30235
Position (kb) 734
735
736 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 734.185 kb on + strand, within ABIE40_RS30215 at 734.185 kb on + strand, within ABIE40_RS30215 at 734.185 kb on + strand, within ABIE40_RS30215 at 734.185 kb on + strand, within ABIE40_RS30215 at 734.186 kb on - strand, within ABIE40_RS30215 at 734.186 kb on - strand, within ABIE40_RS30215 at 734.188 kb on - strand, within ABIE40_RS30215 at 734.293 kb on + strand, within ABIE40_RS30215 at 734.293 kb on + strand, within ABIE40_RS30215 at 734.376 kb on + strand, within ABIE40_RS30215 at 734.388 kb on - strand, within ABIE40_RS30215 at 734.443 kb on + strand, within ABIE40_RS30215 at 734.444 kb on - strand, within ABIE40_RS30215 at 734.522 kb on + strand at 734.585 kb on + strand at 734.609 kb on + strand at 734.610 kb on - strand at 734.764 kb on - strand, within ABIE40_RS30220 at 734.828 kb on - strand at 734.879 kb on + strand at 734.880 kb on - strand at 734.901 kb on + strand at 734.901 kb on + strand at 734.911 kb on + strand at 734.918 kb on - strand at 735.099 kb on + strand, within ABIE40_RS30225 at 735.099 kb on + strand, within ABIE40_RS30225 at 735.100 kb on - strand, within ABIE40_RS30225 at 735.101 kb on + strand, within ABIE40_RS30225 at 735.101 kb on + strand, within ABIE40_RS30225 at 735.101 kb on + strand, within ABIE40_RS30225 at 735.102 kb on - strand, within ABIE40_RS30225 at 735.136 kb on - strand, within ABIE40_RS30225 at 735.136 kb on - strand, within ABIE40_RS30225 at 735.260 kb on + strand at 735.261 kb on - strand at 735.261 kb on - strand at 735.263 kb on - strand at 735.304 kb on + strand at 735.305 kb on - strand at 735.388 kb on - strand at 735.388 kb on - strand at 735.421 kb on - strand at 735.444 kb on - strand, within ABIE40_RS30230 at 735.517 kb on + strand, within ABIE40_RS30230 at 735.518 kb on - strand, within ABIE40_RS30230 at 735.770 kb on + strand at 735.770 kb on + strand at 735.847 kb on + strand at 736.024 kb on + strand, within ABIE40_RS30235 at 736.103 kb on + strand, within ABIE40_RS30235 at 736.103 kb on + strand, within ABIE40_RS30235 at 736.165 kb on + strand, within ABIE40_RS30235 at 736.165 kb on + strand, within ABIE40_RS30235 at 736.165 kb on + strand, within ABIE40_RS30235
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 734,185 + ABIE40_RS30215 0.53 +0.2 734,185 + ABIE40_RS30215 0.53 -0.0 734,185 + ABIE40_RS30215 0.53 +0.5 734,185 + ABIE40_RS30215 0.53 -0.1 734,186 - ABIE40_RS30215 0.53 +0.4 734,186 - ABIE40_RS30215 0.53 -1.8 734,188 - ABIE40_RS30215 0.53 -1.3 734,293 + ABIE40_RS30215 0.67 -0.3 734,293 + ABIE40_RS30215 0.67 -0.6 734,376 + ABIE40_RS30215 0.78 +0.8 734,388 - ABIE40_RS30215 0.79 +0.2 734,443 + ABIE40_RS30215 0.87 -0.2 734,444 - ABIE40_RS30215 0.87 -0.2 734,522 + -2.6 734,585 + -0.2 734,609 + +0.3 734,610 - -0.1 734,764 - ABIE40_RS30220 0.68 +0.7 734,828 - -0.4 734,879 + -0.8 734,880 - -0.6 734,901 + -2.2 734,901 + -1.1 734,911 + +0.1 734,918 - -2.1 735,099 + ABIE40_RS30225 0.50 +1.4 735,099 + ABIE40_RS30225 0.50 -0.1 735,100 - ABIE40_RS30225 0.50 -1.7 735,101 + ABIE40_RS30225 0.50 -2.2 735,101 + ABIE40_RS30225 0.50 -0.7 735,101 + ABIE40_RS30225 0.50 +0.4 735,102 - ABIE40_RS30225 0.51 -2.5 735,136 - ABIE40_RS30225 0.64 -2.6 735,136 - ABIE40_RS30225 0.64 -2.1 735,260 + +1.2 735,261 - -2.0 735,261 - -1.3 735,263 - -0.2 735,304 + -0.8 735,305 - +0.2 735,388 - -1.0 735,388 - +0.6 735,421 - +1.7 735,444 - ABIE40_RS30230 0.13 -0.5 735,517 + ABIE40_RS30230 0.51 +0.5 735,518 - ABIE40_RS30230 0.52 +0.0 735,770 + -2.2 735,770 + -0.5 735,847 + -0.4 736,024 + ABIE40_RS30235 0.12 -0.4 736,103 + ABIE40_RS30235 0.28 +0.2 736,103 + ABIE40_RS30235 0.28 -2.9 736,165 + ABIE40_RS30235 0.40 +1.8 736,165 + ABIE40_RS30235 0.40 -0.5 736,165 + ABIE40_RS30235 0.40 +0.7
Or see this region's nucleotide sequence