Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS27170 and ABIE40_RS27175 are separated by 852 nucleotides ABIE40_RS27175 and ABIE40_RS27180 are separated by 334 nucleotides ABIE40_RS27180 and ABIE40_RS27185 are separated by 182 nucleotides
ABIE40_RS27170: ABIE40_RS27170 - inositol monophosphatase, at 151,921 to 152,751
_RS27170
ABIE40_RS27175: ABIE40_RS27175 - hypothetical protein, at 153,604 to 153,861
_RS27175
ABIE40_RS27180: ABIE40_RS27180 - hypothetical protein, at 154,196 to 154,498
_RS27180
ABIE40_RS27185: ABIE40_RS27185 - cyclic nucleotide-binding domain-containing protein, at 154,681 to 156,195
_RS27185
Position (kb) 153
154 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 152.614 kb on + strand, within ABIE40_RS27170 at 152.614 kb on + strand, within ABIE40_RS27170 at 152.614 kb on + strand, within ABIE40_RS27170 at 152.615 kb on - strand, within ABIE40_RS27170 at 152.704 kb on + strand at 152.704 kb on + strand at 152.705 kb on - strand at 152.705 kb on - strand at 152.705 kb on - strand at 152.708 kb on + strand at 152.709 kb on - strand at 152.715 kb on + strand at 152.729 kb on - strand at 152.729 kb on - strand at 152.790 kb on + strand at 152.791 kb on - strand at 152.828 kb on + strand at 152.830 kb on + strand at 152.989 kb on - strand at 152.989 kb on - strand at 153.000 kb on + strand at 153.000 kb on + strand at 153.000 kb on + strand at 153.001 kb on - strand at 153.001 kb on - strand at 153.003 kb on - strand at 153.054 kb on + strand at 153.091 kb on - strand at 153.113 kb on + strand at 153.213 kb on - strand at 153.251 kb on + strand at 153.251 kb on + strand at 153.252 kb on - strand at 153.387 kb on + strand at 153.392 kb on - strand at 153.446 kb on - strand at 153.498 kb on + strand at 153.499 kb on - strand at 153.645 kb on + strand, within ABIE40_RS27175 at 153.645 kb on + strand, within ABIE40_RS27175 at 153.645 kb on + strand, within ABIE40_RS27175 at 153.646 kb on - strand, within ABIE40_RS27175 at 153.649 kb on + strand, within ABIE40_RS27175 at 153.649 kb on + strand, within ABIE40_RS27175 at 153.874 kb on + strand at 153.875 kb on - strand at 153.903 kb on + strand at 153.904 kb on - strand at 153.904 kb on - strand at 153.978 kb on + strand at 153.979 kb on - strand at 154.086 kb on - strand at 154.086 kb on - strand at 154.086 kb on - strand at 154.145 kb on - strand at 154.230 kb on - strand, within ABIE40_RS27180 at 154.259 kb on + strand, within ABIE40_RS27180 at 154.259 kb on + strand, within ABIE40_RS27180 at 154.260 kb on - strand, within ABIE40_RS27180 at 154.260 kb on - strand, within ABIE40_RS27180 at 154.469 kb on + strand at 154.469 kb on + strand at 154.470 kb on - strand at 154.470 kb on - strand at 154.470 kb on - strand at 154.470 kb on - strand at 154.594 kb on + strand at 154.628 kb on + strand at 154.628 kb on + strand at 154.628 kb on + strand at 154.628 kb on + strand at 154.628 kb on + strand at 154.629 kb on - strand at 154.629 kb on - strand at 154.629 kb on - strand at 154.629 kb on - strand at 154.629 kb on - strand at 154.629 kb on - strand at 154.630 kb on + strand at 154.630 kb on + strand at 154.630 kb on + strand at 154.630 kb on + strand at 154.630 kb on + strand at 154.631 kb on - strand at 154.631 kb on - strand at 154.631 kb on - strand at 154.631 kb on - strand at 154.631 kb on - strand at 154.631 kb on - strand at 154.701 kb on + strand at 154.706 kb on + strand at 154.707 kb on - strand at 154.773 kb on - strand at 154.841 kb on + strand, within ABIE40_RS27185 at 154.841 kb on + strand, within ABIE40_RS27185 at 154.842 kb on - strand, within ABIE40_RS27185
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 152,614 + ABIE40_RS27170 0.83 -0.9 152,614 + ABIE40_RS27170 0.83 -0.9 152,614 + ABIE40_RS27170 0.83 -1.4 152,615 - ABIE40_RS27170 0.84 -0.1 152,704 + +0.4 152,704 + +2.0 152,705 - +0.3 152,705 - +1.1 152,705 - +0.8 152,708 + +0.3 152,709 - -1.5 152,715 + -0.2 152,729 - -1.3 152,729 - +0.0 152,790 + +0.3 152,791 - +0.4 152,828 + -0.9 152,830 + -3.2 152,989 - -0.5 152,989 - +1.6 153,000 + -0.7 153,000 + +0.0 153,000 + -0.9 153,001 - -0.5 153,001 - -1.5 153,003 - -0.5 153,054 + +0.1 153,091 - +2.4 153,113 + +0.5 153,213 - -1.1 153,251 + -1.9 153,251 + -0.6 153,252 - -1.2 153,387 + +1.2 153,392 - -3.0 153,446 - -2.6 153,498 + +0.2 153,499 - -2.4 153,645 + ABIE40_RS27175 0.16 -0.3 153,645 + ABIE40_RS27175 0.16 -1.7 153,645 + ABIE40_RS27175 0.16 -0.5 153,646 - ABIE40_RS27175 0.16 -2.3 153,649 + ABIE40_RS27175 0.17 -0.0 153,649 + ABIE40_RS27175 0.17 -2.9 153,874 + -1.2 153,875 - +0.2 153,903 + +0.1 153,904 - -4.6 153,904 - -0.9 153,978 + -1.9 153,979 - +0.3 154,086 - -1.1 154,086 - -1.4 154,086 - -0.1 154,145 - -2.1 154,230 - ABIE40_RS27180 0.11 -0.1 154,259 + ABIE40_RS27180 0.21 +1.0 154,259 + ABIE40_RS27180 0.21 +0.9 154,260 - ABIE40_RS27180 0.21 +0.6 154,260 - ABIE40_RS27180 0.21 +0.5 154,469 + -1.1 154,469 + -1.5 154,470 - -1.4 154,470 - +0.5 154,470 - -1.0 154,470 - +0.7 154,594 + +0.4 154,628 + +1.9 154,628 + -0.3 154,628 + -1.6 154,628 + +0.7 154,628 + +0.1 154,629 - -0.5 154,629 - +0.2 154,629 - -1.0 154,629 - -0.6 154,629 - -1.5 154,629 - +0.1 154,630 + -0.5 154,630 + +0.4 154,630 + -0.0 154,630 + +0.6 154,630 + +0.2 154,631 - -0.9 154,631 - -0.4 154,631 - +1.5 154,631 - -0.3 154,631 - -2.0 154,631 - +0.7 154,701 + +0.3 154,706 + -1.7 154,707 - -0.7 154,773 - +0.3 154,841 + ABIE40_RS27185 0.11 +0.2 154,841 + ABIE40_RS27185 0.11 +0.6 154,842 - ABIE40_RS27185 0.11 -0.9
Or see this region's nucleotide sequence