Experiment: succinate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS26800 and ABIE40_RS26805 are separated by 9 nucleotides ABIE40_RS26805 and ABIE40_RS26810 are separated by 299 nucleotides
ABIE40_RS26800: ABIE40_RS26800 - J domain-containing protein, at 82,886 to 83,791
_RS26800
ABIE40_RS26805: ABIE40_RS26805 - chaperone modulator CbpM, at 83,801 to 84,118
_RS26805
ABIE40_RS26810: ABIE40_RS26810 - ammonia-dependent NAD(+) synthetase, at 84,418 to 85,275
_RS26810
Position (kb) 83
84
85 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 82.853 kb on + strand at 82.854 kb on - strand at 82.854 kb on - strand at 82.854 kb on - strand at 82.854 kb on - strand at 82.854 kb on - strand at 82.945 kb on - strand at 83.065 kb on + strand, within ABIE40_RS26800 at 83.125 kb on + strand, within ABIE40_RS26800 at 83.125 kb on + strand, within ABIE40_RS26800 at 83.129 kb on + strand, within ABIE40_RS26800 at 83.130 kb on - strand, within ABIE40_RS26800 at 83.132 kb on + strand, within ABIE40_RS26800 at 83.141 kb on + strand, within ABIE40_RS26800 at 83.142 kb on - strand, within ABIE40_RS26800 at 83.142 kb on - strand, within ABIE40_RS26800 at 83.142 kb on - strand, within ABIE40_RS26800 at 83.176 kb on + strand, within ABIE40_RS26800 at 83.176 kb on + strand, within ABIE40_RS26800 at 83.177 kb on - strand, within ABIE40_RS26800 at 83.278 kb on + strand, within ABIE40_RS26800 at 83.278 kb on + strand, within ABIE40_RS26800 at 83.279 kb on - strand, within ABIE40_RS26800 at 83.279 kb on - strand, within ABIE40_RS26800 at 83.437 kb on + strand, within ABIE40_RS26800 at 83.612 kb on + strand, within ABIE40_RS26800 at 83.613 kb on - strand, within ABIE40_RS26800 at 83.613 kb on - strand, within ABIE40_RS26800 at 83.621 kb on - strand, within ABIE40_RS26800 at 83.687 kb on + strand, within ABIE40_RS26800 at 83.687 kb on + strand, within ABIE40_RS26800 at 83.688 kb on - strand, within ABIE40_RS26800 at 83.688 kb on - strand, within ABIE40_RS26800 at 83.764 kb on + strand at 83.765 kb on - strand at 83.787 kb on + strand at 83.787 kb on + strand at 83.787 kb on + strand at 83.787 kb on + strand at 83.788 kb on - strand at 83.788 kb on - strand at 83.788 kb on - strand at 83.788 kb on - strand at 83.789 kb on + strand at 83.789 kb on + strand at 83.789 kb on + strand at 83.789 kb on + strand at 83.790 kb on - strand at 83.909 kb on + strand, within ABIE40_RS26805 at 83.910 kb on - strand, within ABIE40_RS26805 at 83.910 kb on - strand, within ABIE40_RS26805 at 84.090 kb on + strand at 84.162 kb on + strand at 84.163 kb on - strand at 84.163 kb on - strand at 84.197 kb on + strand at 84.197 kb on + strand at 84.198 kb on - strand at 84.198 kb on - strand at 84.198 kb on - strand at 84.201 kb on + strand at 84.201 kb on + strand at 84.201 kb on + strand at 84.202 kb on - strand at 84.202 kb on - strand at 84.202 kb on - strand at 84.202 kb on - strand at 84.202 kb on - strand at 84.202 kb on - strand at 84.202 kb on - strand at 84.202 kb on - strand at 84.202 kb on - strand at 84.363 kb on - strand at 84.372 kb on + strand at 84.372 kb on + strand at 84.373 kb on - strand at 84.461 kb on + strand at 84.461 kb on + strand at 84.461 kb on + strand at 84.461 kb on + strand at 84.461 kb on + strand at 84.462 kb on - strand at 84.462 kb on - strand at 84.464 kb on + strand at 84.464 kb on + strand at 84.464 kb on + strand at 84.464 kb on + strand at 84.464 kb on + strand at 84.465 kb on - strand at 84.465 kb on - strand at 84.465 kb on - strand at 84.465 kb on - strand at 84.465 kb on - strand at 84.487 kb on - strand at 84.536 kb on + strand, within ABIE40_RS26810 at 84.537 kb on - strand, within ABIE40_RS26810 at 84.537 kb on - strand, within ABIE40_RS26810 at 84.537 kb on - strand, within ABIE40_RS26810 at 84.537 kb on - strand, within ABIE40_RS26810 at 84.548 kb on + strand, within ABIE40_RS26810 at 84.548 kb on + strand, within ABIE40_RS26810 at 84.548 kb on + strand, within ABIE40_RS26810 at 84.666 kb on + strand, within ABIE40_RS26810 at 84.666 kb on + strand, within ABIE40_RS26810 at 84.667 kb on - strand, within ABIE40_RS26810 at 84.715 kb on - strand, within ABIE40_RS26810 at 84.715 kb on - strand, within ABIE40_RS26810 at 84.715 kb on - strand, within ABIE40_RS26810 at 84.716 kb on + strand, within ABIE40_RS26810 at 84.716 kb on + strand, within ABIE40_RS26810 at 84.716 kb on + strand, within ABIE40_RS26810 at 84.716 kb on + strand, within ABIE40_RS26810 at 84.716 kb on + strand, within ABIE40_RS26810 at 84.717 kb on - strand, within ABIE40_RS26810 at 84.717 kb on - strand, within ABIE40_RS26810 at 84.717 kb on - strand, within ABIE40_RS26810 at 84.717 kb on - strand, within ABIE40_RS26810 at 84.788 kb on + strand, within ABIE40_RS26810 at 84.788 kb on + strand, within ABIE40_RS26810 at 84.788 kb on + strand, within ABIE40_RS26810 at 84.788 kb on + strand, within ABIE40_RS26810 at 84.789 kb on - strand, within ABIE40_RS26810 at 84.789 kb on - strand, within ABIE40_RS26810 at 84.789 kb on - strand, within ABIE40_RS26810 at 84.789 kb on - strand, within ABIE40_RS26810 at 84.789 kb on - strand, within ABIE40_RS26810 at 84.801 kb on + strand, within ABIE40_RS26810 at 84.801 kb on + strand, within ABIE40_RS26810 at 84.801 kb on + strand, within ABIE40_RS26810 at 84.802 kb on - strand, within ABIE40_RS26810 at 84.892 kb on - strand, within ABIE40_RS26810 at 84.922 kb on - strand, within ABIE40_RS26810 at 84.922 kb on - strand, within ABIE40_RS26810 at 84.943 kb on - strand, within ABIE40_RS26810
Per-strain Table
Position Strand Gene LocusTag Fraction succinate (C) remove 82,853 + +1.3 82,854 - -1.5 82,854 - +0.6 82,854 - -0.2 82,854 - -2.0 82,854 - -2.5 82,945 - -1.2 83,065 + ABIE40_RS26800 0.20 +2.3 83,125 + ABIE40_RS26800 0.26 +3.9 83,125 + ABIE40_RS26800 0.26 +1.1 83,129 + ABIE40_RS26800 0.27 -0.3 83,130 - ABIE40_RS26800 0.27 -3.3 83,132 + ABIE40_RS26800 0.27 -1.7 83,141 + ABIE40_RS26800 0.28 +0.5 83,142 - ABIE40_RS26800 0.28 +0.6 83,142 - ABIE40_RS26800 0.28 -0.2 83,142 - ABIE40_RS26800 0.28 +0.4 83,176 + ABIE40_RS26800 0.32 +0.6 83,176 + ABIE40_RS26800 0.32 -0.4 83,177 - ABIE40_RS26800 0.32 +0.9 83,278 + ABIE40_RS26800 0.43 -3.4 83,278 + ABIE40_RS26800 0.43 +1.0 83,279 - ABIE40_RS26800 0.43 -0.5 83,279 - ABIE40_RS26800 0.43 +0.1 83,437 + ABIE40_RS26800 0.61 -1.1 83,612 + ABIE40_RS26800 0.80 -1.2 83,613 - ABIE40_RS26800 0.80 -2.1 83,613 - ABIE40_RS26800 0.80 -0.2 83,621 - ABIE40_RS26800 0.81 -1.2 83,687 + ABIE40_RS26800 0.88 -1.4 83,687 + ABIE40_RS26800 0.88 -0.7 83,688 - ABIE40_RS26800 0.89 +1.1 83,688 - ABIE40_RS26800 0.89 -0.2 83,764 + -1.8 83,765 - -0.4 83,787 + -1.5 83,787 + -2.2 83,787 + +0.8 83,787 + -1.7 83,788 - +1.2 83,788 - -1.2 83,788 - +0.7 83,788 - -1.7 83,789 + -0.0 83,789 + -2.0 83,789 + +1.3 83,789 + -2.2 83,790 - -1.3 83,909 + ABIE40_RS26805 0.34 -1.3 83,910 - ABIE40_RS26805 0.34 -0.9 83,910 - ABIE40_RS26805 0.34 -1.0 84,090 + -0.8 84,162 + -0.5 84,163 - -1.4 84,163 - +0.3 84,197 + +0.4 84,197 + +0.7 84,198 - +0.6 84,198 - +0.6 84,198 - -3.4 84,201 + +0.8 84,201 + -0.9 84,201 + +0.7 84,202 - -0.3 84,202 - -3.7 84,202 - -3.8 84,202 - +2.3 84,202 - -1.0 84,202 - -0.1 84,202 - +0.8 84,202 - +0.7 84,202 - -1.0 84,363 - -0.5 84,372 + -0.2 84,372 + -0.8 84,373 - +0.9 84,461 + -0.7 84,461 + +0.7 84,461 + +0.2 84,461 + -1.3 84,461 + +0.0 84,462 - -1.8 84,462 - -2.8 84,464 + +0.0 84,464 + -0.6 84,464 + -0.5 84,464 + -0.8 84,464 + -0.1 84,465 - -0.0 84,465 - +0.6 84,465 - -0.8 84,465 - +0.9 84,465 - -0.5 84,487 - +0.4 84,536 + ABIE40_RS26810 0.14 -1.2 84,537 - ABIE40_RS26810 0.14 -0.7 84,537 - ABIE40_RS26810 0.14 +0.6 84,537 - ABIE40_RS26810 0.14 -1.8 84,537 - ABIE40_RS26810 0.14 -1.2 84,548 + ABIE40_RS26810 0.15 +0.2 84,548 + ABIE40_RS26810 0.15 +1.2 84,548 + ABIE40_RS26810 0.15 +0.3 84,666 + ABIE40_RS26810 0.29 -0.1 84,666 + ABIE40_RS26810 0.29 +1.0 84,667 - ABIE40_RS26810 0.29 +0.2 84,715 - ABIE40_RS26810 0.35 -0.3 84,715 - ABIE40_RS26810 0.35 -0.1 84,715 - ABIE40_RS26810 0.35 -2.2 84,716 + ABIE40_RS26810 0.35 +1.9 84,716 + ABIE40_RS26810 0.35 -2.6 84,716 + ABIE40_RS26810 0.35 +0.3 84,716 + ABIE40_RS26810 0.35 -1.9 84,716 + ABIE40_RS26810 0.35 -3.5 84,717 - ABIE40_RS26810 0.35 -0.5 84,717 - ABIE40_RS26810 0.35 -2.4 84,717 - ABIE40_RS26810 0.35 -1.6 84,717 - ABIE40_RS26810 0.35 +1.0 84,788 + ABIE40_RS26810 0.43 -3.0 84,788 + ABIE40_RS26810 0.43 -0.1 84,788 + ABIE40_RS26810 0.43 +0.4 84,788 + ABIE40_RS26810 0.43 -2.1 84,789 - ABIE40_RS26810 0.43 +1.0 84,789 - ABIE40_RS26810 0.43 -1.4 84,789 - ABIE40_RS26810 0.43 +0.5 84,789 - ABIE40_RS26810 0.43 +0.4 84,789 - ABIE40_RS26810 0.43 -1.8 84,801 + ABIE40_RS26810 0.45 -0.6 84,801 + ABIE40_RS26810 0.45 +0.5 84,801 + ABIE40_RS26810 0.45 -0.6 84,802 - ABIE40_RS26810 0.45 +0.2 84,892 - ABIE40_RS26810 0.55 +1.7 84,922 - ABIE40_RS26810 0.59 -1.3 84,922 - ABIE40_RS26810 0.59 -0.6 84,943 - ABIE40_RS26810 0.61 +0.3
Or see this region's nucleotide sequence