Strain Fitness in Rhodanobacter denitrificans FW104-10B01 around LRK54_RS04820

Experiment: R2A with Manganese (II) chloride tetrahydrate 2.5 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Manganese (II) chloride tetrahydrate 2.5 mM
1,021,621	+		LRK54_RS04810	0.86	-0.7
1,021,621	+		LRK54_RS04810	0.86	-0.2
1,021,621	+		LRK54_RS04810	0.86	-0.8
1,021,621	+		LRK54_RS04810	0.86	+0.2
1,021,621	+		LRK54_RS04810	0.86	+0.2
1,021,621	+		LRK54_RS04810	0.86	-0.4
1,021,621	+		LRK54_RS04810	0.86	+0.6
1,021,621	+		LRK54_RS04810	0.86	-1.4
1,021,621	+		LRK54_RS04810	0.86	-0.4
1,021,622	-		LRK54_RS04810	0.86	-0.6
1,021,622	-		LRK54_RS04810	0.86	+0.4
1,021,622	-		LRK54_RS04810	0.86	-1.2
1,021,622	-		LRK54_RS04810	0.86	-0.5
1,021,622	-		LRK54_RS04810	0.86	-0.3
1,021,622	-		LRK54_RS04810	0.86	-0.2
1,021,622	-		LRK54_RS04810	0.86	-0.2
1,021,622	-		LRK54_RS04810	0.86	-0.6
1,021,622	-		LRK54_RS04810	0.86	-0.3
1,021,622	-		LRK54_RS04810	0.86	-0.3
1,021,622	-		LRK54_RS04810	0.86	+0.2
1,021,622	-		LRK54_RS04810	0.86	-1.0
1,021,622	-		LRK54_RS04810	0.86	+0.5
1,021,622	-		LRK54_RS04810	0.86	+0.3
1,021,924	+				+0.8
1,021,924	+				-0.6
1,021,924	+				-0.1
1,021,993	+				-0.0
1,021,993	+				+0.6
1,021,993	+				-0.4
1,021,994	-				+0.4
1,021,994	-				-1.0
1,022,005	+				-1.1
1,022,005	+				-1.2
1,022,005	+				-0.4
1,022,005	+				+0.1
1,022,006	-				-0.2
1,022,016	+				-0.1
1,022,016	+				+0.3
1,022,016	+				+0.2
1,022,016	+				+1.2
1,022,016	+				-0.3
1,022,016	+				-2.0
1,022,016	+				+0.2
1,022,016	+				-0.8
1,022,016	+				-0.6
1,022,016	+				+0.3
1,022,016	+				+0.1
1,022,016	+				-0.1
1,022,016	+				+0.4
1,022,016	+				-1.0
1,022,016	+				-0.1
1,022,016	+				-0.2
1,022,016	+				+0.1
1,022,016	+				-1.0
1,022,016	+				-0.4
1,022,016	+				-1.1
1,022,017	-				+0.6
1,022,017	-				+0.7
1,022,017	-				-0.1
1,022,017	-				-2.3
1,022,017	-				+0.4
1,022,017	-				+0.1
1,022,017	-				+2.0
1,022,017	-				-0.8
1,022,017	-				-0.3
1,022,017	-				+0.3
1,022,017	-				-0.4
1,022,017	-				-0.7
1,022,017	-				-0.7
1,022,017	-				-0.6
1,022,017	-				+0.0
1,022,068	+				-0.4
1,022,068	+				-0.2
1,022,068	+				+0.3
1,022,068	+				-1.2
1,022,068	+				+1.1
1,022,068	+				+0.0
1,022,069	-				+2.1
1,022,069	-				-0.4
1,022,069	-				-1.5
1,022,069	-				-0.8
1,022,069	-				+0.5
1,022,069	-				-1.5
1,022,176	+		LRK54_RS04815	0.13	-0.0
1,022,176	+		LRK54_RS04815	0.13	-0.2
1,022,176	+		LRK54_RS04815	0.13	-0.5
1,022,176	+		LRK54_RS04815	0.13	-0.2
1,022,176	+		LRK54_RS04815	0.13	-0.2
1,022,176	+		LRK54_RS04815	0.13	-0.3
1,022,176	+		LRK54_RS04815	0.13	-0.6
1,022,176	+		LRK54_RS04815	0.13	-0.4
1,022,176	+		LRK54_RS04815	0.13	+0.6
1,022,176	+		LRK54_RS04815	0.13	-0.4
1,022,176	+		LRK54_RS04815	0.13	-0.5
1,022,177	-		LRK54_RS04815	0.14	+0.3
1,022,177	-		LRK54_RS04815	0.14	-0.6
1,022,177	-		LRK54_RS04815	0.14	+0.8
1,022,177	-		LRK54_RS04815	0.14	-0.6
1,022,177	-		LRK54_RS04815	0.14	-1.0
1,022,177	-		LRK54_RS04815	0.14	-0.3
1,022,177	-		LRK54_RS04815	0.14	+0.1
1,022,177	-		LRK54_RS04815	0.14	+0.0
1,022,177	-		LRK54_RS04815	0.14	-1.5
1,022,177	-		LRK54_RS04815	0.14	-1.0
1,022,177	-		LRK54_RS04815	0.14	-0.6
1,022,177	-		LRK54_RS04815	0.14	-0.1
1,022,185	+		LRK54_RS04815	0.16	+0.2
1,022,185	+		LRK54_RS04815	0.16	-0.6
1,022,185	+		LRK54_RS04815	0.16	-1.2
1,022,185	+		LRK54_RS04815	0.16	+2.0
1,022,185	+		LRK54_RS04815	0.16	+0.5
1,022,185	+		LRK54_RS04815	0.16	-0.4
1,022,186	-		LRK54_RS04815	0.16	-1.5
1,022,186	-		LRK54_RS04815	0.16	-0.1
1,022,186	-		LRK54_RS04815	0.16	-1.2
1,022,186	-		LRK54_RS04815	0.16	-1.2
1,022,186	-		LRK54_RS04815	0.16	+0.6
1,022,186	-		LRK54_RS04815	0.16	-1.9
1,022,186	-		LRK54_RS04815	0.16	+0.4
1,022,186	-		LRK54_RS04815	0.16	-0.1
1,022,186	-		LRK54_RS04815	0.16	+0.4
1,022,186	-		LRK54_RS04815	0.16	+0.0
1,022,186	-		LRK54_RS04815	0.16	-0.4
1,022,186	-		LRK54_RS04815	0.16	-0.2
1,022,186	-		LRK54_RS04815	0.16	+1.4
1,022,186	-		LRK54_RS04815	0.16	+1.0
1,022,186	-		LRK54_RS04815	0.16	+0.2
1,022,186	-		LRK54_RS04815	0.16	+1.8
1,022,254	+		LRK54_RS04815	0.34	+0.4
1,022,254	+		LRK54_RS04815	0.34	-0.3
1,022,254	+		LRK54_RS04815	0.34	+0.2
1,022,254	+		LRK54_RS04815	0.34	-0.2
1,022,254	+		LRK54_RS04815	0.34	+0.5
1,022,254	+		LRK54_RS04815	0.34	-0.7
1,022,254	+		LRK54_RS04815	0.34	-0.1
1,022,254	+		LRK54_RS04815	0.34	+0.7
1,022,254	+		LRK54_RS04815	0.34	+0.1
1,022,254	+		LRK54_RS04815	0.34	-1.3
1,022,254	+		LRK54_RS04815	0.34	+1.0
1,022,254	+		LRK54_RS04815	0.34	-0.7
1,022,254	+		LRK54_RS04815	0.34	-0.3
1,022,254	+		LRK54_RS04815	0.34	-0.2
1,022,254	+		LRK54_RS04815	0.34	+0.1
1,022,254	+		LRK54_RS04815	0.34	+0.2
1,022,254	+		LRK54_RS04815	0.34	-0.8
1,022,254	+		LRK54_RS04815	0.34	-1.0
1,022,254	+		LRK54_RS04815	0.34	+0.6
1,022,254	+		LRK54_RS04815	0.34	+0.3
1,022,254	+		LRK54_RS04815	0.34	+0.5
1,022,254	+		LRK54_RS04815	0.34	+0.9
1,022,254	+		LRK54_RS04815	0.34	+1.3
1,022,254	+		LRK54_RS04815	0.34	+0.0
1,022,255	-		LRK54_RS04815	0.34	-0.1
1,022,255	-		LRK54_RS04815	0.34	-0.6
1,022,255	-		LRK54_RS04815	0.34	+0.1
1,022,255	-		LRK54_RS04815	0.34	-1.1
1,022,255	-		LRK54_RS04815	0.34	+0.2
1,022,255	-		LRK54_RS04815	0.34	+0.4
1,022,255	-		LRK54_RS04815	0.34	-0.4
1,022,255	-		LRK54_RS04815	0.34	-0.8
1,022,255	-		LRK54_RS04815	0.34	-0.5
1,022,255	-		LRK54_RS04815	0.34	+0.0
1,022,255	-		LRK54_RS04815	0.34	+1.0
1,022,255	-		LRK54_RS04815	0.34	-1.5
1,022,255	-		LRK54_RS04815	0.34	+2.2
1,022,255	-		LRK54_RS04815	0.34	-0.7
1,022,255	-		LRK54_RS04815	0.34	+0.3
1,022,255	-		LRK54_RS04815	0.34	+1.0
1,022,255	-		LRK54_RS04815	0.34	-0.8
1,022,255	-		LRK54_RS04815	0.34	-0.6
1,022,302	+		LRK54_RS04815	0.46	+2.5
1,022,302	+		LRK54_RS04815	0.46	+1.7
1,022,303	-		LRK54_RS04815	0.46	-0.2
1,022,316	+		LRK54_RS04815	0.50	-0.4
1,022,316	+		LRK54_RS04815	0.50	+0.2
1,022,316	+		LRK54_RS04815	0.50	-0.6
1,022,316	+		LRK54_RS04815	0.50	-0.1
1,022,316	+		LRK54_RS04815	0.50	-0.1
1,022,316	+		LRK54_RS04815	0.50	-1.0
1,022,316	+		LRK54_RS04815	0.50	+0.8
1,022,316	+		LRK54_RS04815	0.50	+1.1
1,022,317	-		LRK54_RS04815	0.50	+0.3
1,022,317	-		LRK54_RS04815	0.50	+0.1
1,022,317	-		LRK54_RS04815	0.50	+0.5
1,022,317	-		LRK54_RS04815	0.50	+0.1
1,022,317	-		LRK54_RS04815	0.50	+0.0
1,022,332	+		LRK54_RS04815	0.54	+0.8
1,022,332	+		LRK54_RS04815	0.54	+0.3
1,022,333	-		LRK54_RS04815	0.54	-0.8
1,022,333	-		LRK54_RS04815	0.54	-1.0
1,022,389	+		LRK54_RS04815	0.69	-0.6
1,022,389	+		LRK54_RS04815	0.69	-0.2
1,022,389	+		LRK54_RS04815	0.69	+0.7
1,022,389	+		LRK54_RS04815	0.69	-0.1
1,022,389	+		LRK54_RS04815	0.69	+0.1
1,022,389	+		LRK54_RS04815	0.69	-0.4
1,022,389	+		LRK54_RS04815	0.69	-1.5
1,022,389	+		LRK54_RS04815	0.69	-0.5
1,022,389	+		LRK54_RS04815	0.69	+0.1
1,022,389	+		LRK54_RS04815	0.69	-1.2
1,022,390	-		LRK54_RS04815	0.69	-0.0
1,022,390	-		LRK54_RS04815	0.69	+0.5
1,022,390	-		LRK54_RS04815	0.69	+0.8
1,022,390	-		LRK54_RS04815	0.69	-0.8
1,022,390	-		LRK54_RS04815	0.69	-1.1
1,022,390	-		LRK54_RS04815	0.69	+0.2
1,022,390	-		LRK54_RS04815	0.69	+1.0
1,022,390	-		LRK54_RS04815	0.69	-0.2
1,022,390	-		LRK54_RS04815	0.69	+0.8
1,022,390	-		LRK54_RS04815	0.69	-0.6
1,022,390	-		LRK54_RS04815	0.69	+0.0
1,022,390	-		LRK54_RS04815	0.69	+0.2
1,022,526	+				-1.9
1,022,527	-				-0.3
1,022,527	-				-0.1
1,022,527	-				-0.3
1,022,527	-				-0.6
1,022,527	-				-1.9
1,022,527	-				-2.1
1,022,527	-				-1.0
1,022,527	-				-0.7
1,022,805	+		LRK54_RS04820	0.62	-1.1
1,022,805	+		LRK54_RS04820	0.62	-0.2
1,022,806	-		LRK54_RS04820	0.62	-0.1
1,023,099	+		LRK54_RS04825	0.22	-0.3
1,023,099	+		LRK54_RS04825	0.22	-1.0
1,023,100	-		LRK54_RS04825	0.22	+0.0
1,023,100	-		LRK54_RS04825	0.22	+1.2
1,023,100	-		LRK54_RS04825	0.22	-0.3
1,023,100	-		LRK54_RS04825	0.22	-0.0
1,023,100	-		LRK54_RS04825	0.22	-0.5
1,023,100	-		LRK54_RS04825	0.22	-0.6
1,023,177	+		LRK54_RS04825	0.36	-1.2
1,023,177	+		LRK54_RS04825	0.36	-1.1
1,023,177	+		LRK54_RS04825	0.36	+0.1
1,023,177	+		LRK54_RS04825	0.36	+0.0
1,023,177	+		LRK54_RS04825	0.36	-0.0
1,023,177	+		LRK54_RS04825	0.36	+1.0
1,023,178	-		LRK54_RS04825	0.36	+1.3
1,023,178	-		LRK54_RS04825	0.36	-0.5
1,023,178	-		LRK54_RS04825	0.36	-0.8
1,023,178	-		LRK54_RS04825	0.36	-0.5
1,023,178	-		LRK54_RS04825	0.36	-0.7
1,023,178	-		LRK54_RS04825	0.36	-1.3
1,023,178	-		LRK54_RS04825	0.36	-0.4
1,023,178	-		LRK54_RS04825	0.36	-0.0
1,023,390	+		LRK54_RS04825	0.74	-0.1
1,023,390	+		LRK54_RS04825	0.74	+0.4
1,023,390	+		LRK54_RS04825	0.74	-0.8
1,023,390	+		LRK54_RS04825	0.74	-0.4
1,023,390	+		LRK54_RS04825	0.74	+1.8
1,023,390	+		LRK54_RS04825	0.74	-0.8
1,023,390	+		LRK54_RS04825	0.74	+0.3
1,023,390	+		LRK54_RS04825	0.74	-0.1
1,023,390	+		LRK54_RS04825	0.74	-0.4
1,023,391	-		LRK54_RS04825	0.75	-1.5
1,023,391	-		LRK54_RS04825	0.75	-0.3
1,023,391	-		LRK54_RS04825	0.75	+0.5
1,023,391	-		LRK54_RS04825	0.75	-0.3
1,023,391	-		LRK54_RS04825	0.75	+1.2
1,023,434	-		LRK54_RS04825	0.82	-0.3
1,023,653	+				-2.5
1,023,653	+				-0.3
1,023,653	+				-0.4
1,023,653	+				-0.2
1,023,653	+				-0.6
1,023,653	+				-0.3
1,023,653	+				-0.0
1,023,653	+				-0.8
1,023,653	+				-0.7
1,023,653	+				+0.3
1,023,653	+				-0.1
1,023,653	+				-0.9
1,023,653	+				-1.0
1,023,653	+				+0.5
1,023,653	+				+0.7
1,023,653	+				-0.2
1,023,653	+				+0.5
1,023,653	+				-0.6
1,023,654	-				-0.5
1,023,654	-				-1.5
1,023,654	-				-0.2
1,023,654	-				+1.3
1,023,654	-				-1.5
1,023,654	-				+0.3
1,023,654	-				+0.1
1,023,654	-				+1.0
1,023,654	-				-1.5
1,023,654	-				+0.9
1,023,654	-				+1.7
1,023,654	-				-0.4
1,023,654	-				+0.0
1,023,654	-				+0.5
1,023,654	-				+0.1
1,023,654	-				+0.0
1,023,654	-				-0.5
1,023,654	-				+0.1
1,023,654	-				+1.3
1,023,654	-				-0.8
1,023,654	-				-0.4
1,023,654	-				+0.8
1,023,654	-				-0.7
1,023,654	-				-1.2
1,023,654	-				+0.5
1,023,654	-				-0.3
1,023,654	-				-1.2
1,023,764	+		LRK54_RS04830	0.17	-0.2
1,023,764	+		LRK54_RS04830	0.17	-1.0
1,023,764	+		LRK54_RS04830	0.17	-0.0
1,023,764	+		LRK54_RS04830	0.17	-0.6
1,023,764	+		LRK54_RS04830	0.17	+0.3
1,023,764	+		LRK54_RS04830	0.17	-0.4
1,023,764	+		LRK54_RS04830	0.17	-0.4
1,023,764	+		LRK54_RS04830	0.17	+0.2
1,023,764	+		LRK54_RS04830	0.17	-0.8
1,023,765	-		LRK54_RS04830	0.17	-1.7
1,023,765	-		LRK54_RS04830	0.17	-0.6
1,023,765	-		LRK54_RS04830	0.17	-1.0
1,023,765	-		LRK54_RS04830	0.17	+0.1
1,023,765	-		LRK54_RS04830	0.17	+0.2
1,023,765	-		LRK54_RS04830	0.17	-0.0
1,023,765	-		LRK54_RS04830	0.17	-0.6
1,023,800	+		LRK54_RS04830	0.20	-2.6
1,023,800	+		LRK54_RS04830	0.20	+0.7
1,023,800	+		LRK54_RS04830	0.20	-1.1
1,023,800	+		LRK54_RS04830	0.20	+0.9
1,023,800	+		LRK54_RS04830	0.20	+0.4
1,023,800	+		LRK54_RS04830	0.20	-0.6
1,023,800	+		LRK54_RS04830	0.20	-0.1
1,023,800	+		LRK54_RS04830	0.20	+0.2
1,023,800	+		LRK54_RS04830	0.20	-0.5
1,023,800	+		LRK54_RS04830	0.20	+1.1
1,023,801	-		LRK54_RS04830	0.21	-0.1
1,023,801	-		LRK54_RS04830	0.21	-0.1
1,023,801	-		LRK54_RS04830	0.21	-0.3
1,023,801	-		LRK54_RS04830	0.21	+0.1
1,023,801	-		LRK54_RS04830	0.21	-0.2
1,023,801	-		LRK54_RS04830	0.21	-0.4
1,023,884	+		LRK54_RS04830	0.28	-0.5
1,023,884	+		LRK54_RS04830	0.28	-0.7
1,023,885	-		LRK54_RS04830	0.29	+0.1
1,023,885	-		LRK54_RS04830	0.29	-0.2
1,023,885	-		LRK54_RS04830	0.29	+0.3
1,023,974	+		LRK54_RS04830	0.37	-0.4
1,023,974	+		LRK54_RS04830	0.37	-1.9
1,023,974	+		LRK54_RS04830	0.37	-2.0
1,023,974	+		LRK54_RS04830	0.37	-0.7
1,023,974	+		LRK54_RS04830	0.37	-0.3
1,023,974	+		LRK54_RS04830	0.37	-0.3
1,023,974	+		LRK54_RS04830	0.37	-1.3
1,023,974	+		LRK54_RS04830	0.37	-0.4
1,023,974	+		LRK54_RS04830	0.37	-0.6
1,023,974	+		LRK54_RS04830	0.37	+1.0
1,023,974	+		LRK54_RS04830	0.37	-1.4
1,023,974	+		LRK54_RS04830	0.37	+0.3
1,023,974	+		LRK54_RS04830	0.37	+0.3
1,023,974	+		LRK54_RS04830	0.37	-0.6
1,023,975	-		LRK54_RS04830	0.37	+0.0
1,023,975	-		LRK54_RS04830	0.37	-0.8
1,023,975	-		LRK54_RS04830	0.37	-0.1
1,023,975	-		LRK54_RS04830	0.37	-2.1
1,023,975	-		LRK54_RS04830	0.37	+0.2
1,023,975	-		LRK54_RS04830	0.37	+0.4
1,023,975	-		LRK54_RS04830	0.37	-0.3
1,023,975	-		LRK54_RS04830	0.37	+0.4