Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_3739 and EX28DRAFT_3740 are separated by 49 nucleotides EX28DRAFT_3740 and EX28DRAFT_3741 overlap by 1 nucleotides EX28DRAFT_3741 and EX28DRAFT_3742 overlap by 4 nucleotides
EX28DRAFT_3739: EX28DRAFT_3739 - TonB-dependent siderophore receptor, at 416,271 to 418,520
_3739
EX28DRAFT_3740: EX28DRAFT_3740 - ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components, at 418,570 to 419,367
_3740
EX28DRAFT_3741: EX28DRAFT_3741 - ABC-type Fe3+-hydroxamate transport system, periplasmic component, at 419,367 to 420,257
_3741
EX28DRAFT_3742: EX28DRAFT_3742 - ABC-type Fe3+-siderophore transport system, permease component, at 420,254 to 422,236
_3742
Position (kb) 418
419
420 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 417.679 kb on - strand, within EX28DRAFT_3739 at 417.825 kb on + strand, within EX28DRAFT_3739 at 417.845 kb on - strand, within EX28DRAFT_3739 at 417.923 kb on + strand, within EX28DRAFT_3739 at 417.936 kb on + strand, within EX28DRAFT_3739 at 417.937 kb on - strand, within EX28DRAFT_3739 at 417.954 kb on + strand, within EX28DRAFT_3739 at 417.954 kb on + strand, within EX28DRAFT_3739 at 417.955 kb on - strand, within EX28DRAFT_3739 at 417.996 kb on + strand, within EX28DRAFT_3739 at 418.013 kb on + strand, within EX28DRAFT_3739 at 418.137 kb on + strand, within EX28DRAFT_3739 at 418.137 kb on + strand, within EX28DRAFT_3739 at 418.138 kb on - strand, within EX28DRAFT_3739 at 418.138 kb on - strand, within EX28DRAFT_3739 at 418.139 kb on + strand, within EX28DRAFT_3739 at 418.139 kb on + strand, within EX28DRAFT_3739 at 418.140 kb on - strand, within EX28DRAFT_3739 at 418.140 kb on - strand, within EX28DRAFT_3739 at 418.143 kb on + strand, within EX28DRAFT_3739 at 418.144 kb on - strand, within EX28DRAFT_3739 at 418.144 kb on - strand, within EX28DRAFT_3739 at 418.144 kb on - strand, within EX28DRAFT_3739 at 418.158 kb on + strand, within EX28DRAFT_3739 at 418.176 kb on + strand, within EX28DRAFT_3739 at 418.233 kb on + strand, within EX28DRAFT_3739 at 418.234 kb on - strand, within EX28DRAFT_3739 at 418.303 kb on - strand at 418.338 kb on + strand at 418.365 kb on + strand at 418.438 kb on - strand at 418.461 kb on + strand at 418.518 kb on + strand at 418.518 kb on + strand at 418.518 kb on + strand at 418.519 kb on - strand at 418.557 kb on + strand at 418.558 kb on - strand at 418.835 kb on - strand, within EX28DRAFT_3740 at 419.218 kb on + strand, within EX28DRAFT_3740 at 419.298 kb on + strand at 419.298 kb on + strand at 419.299 kb on - strand at 419.299 kb on - strand at 419.299 kb on - strand at 419.560 kb on - strand, within EX28DRAFT_3741 at 419.560 kb on - strand, within EX28DRAFT_3741 at 419.560 kb on - strand, within EX28DRAFT_3741 at 419.561 kb on + strand, within EX28DRAFT_3741 at 419.562 kb on - strand, within EX28DRAFT_3741 at 419.562 kb on - strand, within EX28DRAFT_3741 at 420.190 kb on - strand at 420.248 kb on + strand at 420.248 kb on + strand at 420.249 kb on - strand at 420.249 kb on - strand at 420.259 kb on + strand at 420.291 kb on + strand at 420.318 kb on + strand at 420.319 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 417,679 - EX28DRAFT_3739 0.63 +0.8 417,825 + EX28DRAFT_3739 0.69 -1.1 417,845 - EX28DRAFT_3739 0.70 +0.1 417,923 + EX28DRAFT_3739 0.73 +1.1 417,936 + EX28DRAFT_3739 0.74 -2.0 417,937 - EX28DRAFT_3739 0.74 -2.2 417,954 + EX28DRAFT_3739 0.75 -0.8 417,954 + EX28DRAFT_3739 0.75 -3.2 417,955 - EX28DRAFT_3739 0.75 -0.3 417,996 + EX28DRAFT_3739 0.77 -0.5 418,013 + EX28DRAFT_3739 0.77 -0.1 418,137 + EX28DRAFT_3739 0.83 -0.0 418,137 + EX28DRAFT_3739 0.83 -1.1 418,138 - EX28DRAFT_3739 0.83 -1.4 418,138 - EX28DRAFT_3739 0.83 +0.2 418,139 + EX28DRAFT_3739 0.83 -0.2 418,139 + EX28DRAFT_3739 0.83 -0.6 418,140 - EX28DRAFT_3739 0.83 +0.2 418,140 - EX28DRAFT_3739 0.83 -0.4 418,143 + EX28DRAFT_3739 0.83 -0.5 418,144 - EX28DRAFT_3739 0.83 -0.9 418,144 - EX28DRAFT_3739 0.83 +0.5 418,144 - EX28DRAFT_3739 0.83 -0.5 418,158 + EX28DRAFT_3739 0.84 -0.3 418,176 + EX28DRAFT_3739 0.85 -0.2 418,233 + EX28DRAFT_3739 0.87 -0.2 418,234 - EX28DRAFT_3739 0.87 +0.2 418,303 - +1.4 418,338 + +0.5 418,365 + -2.2 418,438 - +0.1 418,461 + +0.6 418,518 + +0.4 418,518 + +0.0 418,518 + +2.3 418,519 - +0.0 418,557 + +0.9 418,558 - -0.3 418,835 - EX28DRAFT_3740 0.33 -0.9 419,218 + EX28DRAFT_3740 0.81 +0.1 419,298 + +0.4 419,298 + -1.6 419,299 - +1.3 419,299 - +0.1 419,299 - -0.8 419,560 - EX28DRAFT_3741 0.22 +0.1 419,560 - EX28DRAFT_3741 0.22 -1.5 419,560 - EX28DRAFT_3741 0.22 +0.9 419,561 + EX28DRAFT_3741 0.22 -0.7 419,562 - EX28DRAFT_3741 0.22 -0.6 419,562 - EX28DRAFT_3741 0.22 +0.6 420,190 - -0.2 420,248 + -3.7 420,248 + +0.7 420,249 - +0.0 420,249 - -2.1 420,259 + -1.2 420,291 + -1.7 420,318 + +1.0 420,319 - -0.1
Or see this region's nucleotide sequence