Strain Fitness in Pseudomonas fluorescens SBW25 around PFLU_RS02590

Experiment: succinate (C); with MOPS

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPFLU_RS02585 and PFLU_RS02590 are separated by 294 nucleotidesPFLU_RS02590 and PFLU_RS02595 are separated by 55 nucleotides PFLU_RS02585: PFLU_RS02585 - protease modulator HflC, at 592,766 to 593,632 _RS02585 PFLU_RS02590: PFLU_RS02590 - ATP phosphoribosyltransferase regulatory subunit, at 593,927 to 595,114 _RS02590 PFLU_RS02595: PFLU_RS02595 - adenylosuccinate synthase, at 595,170 to 596,459 _RS02595 Position (kb) 593 594 595 596Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 592.928 kb on + strand, within PFLU_RS02585at 592.928 kb on + strand, within PFLU_RS02585at 592.928 kb on + strand, within PFLU_RS02585at 592.929 kb on - strand, within PFLU_RS02585at 592.929 kb on - strand, within PFLU_RS02585at 592.929 kb on - strand, within PFLU_RS02585at 592.929 kb on - strand, within PFLU_RS02585at 592.981 kb on + strand, within PFLU_RS02585at 592.981 kb on + strand, within PFLU_RS02585at 592.981 kb on + strand, within PFLU_RS02585at 592.981 kb on + strand, within PFLU_RS02585at 592.982 kb on - strand, within PFLU_RS02585at 592.982 kb on - strand, within PFLU_RS02585at 592.982 kb on - strand, within PFLU_RS02585at 592.982 kb on - strand, within PFLU_RS02585at 592.982 kb on - strand, within PFLU_RS02585at 592.982 kb on - strand, within PFLU_RS02585at 592.982 kb on - strand, within PFLU_RS02585at 593.031 kb on - strand, within PFLU_RS02585at 593.066 kb on + strand, within PFLU_RS02585at 593.066 kb on + strand, within PFLU_RS02585at 593.066 kb on + strand, within PFLU_RS02585at 593.066 kb on + strand, within PFLU_RS02585at 593.066 kb on + strand, within PFLU_RS02585at 593.066 kb on + strand, within PFLU_RS02585at 593.067 kb on - strand, within PFLU_RS02585at 593.149 kb on + strand, within PFLU_RS02585at 593.150 kb on - strand, within PFLU_RS02585at 593.318 kb on - strand, within PFLU_RS02585at 593.318 kb on - strand, within PFLU_RS02585at 593.318 kb on - strand, within PFLU_RS02585at 593.383 kb on + strand, within PFLU_RS02585at 593.383 kb on + strand, within PFLU_RS02585at 593.383 kb on + strand, within PFLU_RS02585at 593.415 kb on + strand, within PFLU_RS02585at 593.415 kb on + strand, within PFLU_RS02585at 593.415 kb on + strand, within PFLU_RS02585at 593.415 kb on + strand, within PFLU_RS02585at 593.416 kb on - strand, within PFLU_RS02585at 593.486 kb on + strand, within PFLU_RS02585at 593.487 kb on - strand, within PFLU_RS02585at 593.487 kb on - strand, within PFLU_RS02585at 593.498 kb on + strand, within PFLU_RS02585at 593.519 kb on + strand, within PFLU_RS02585at 593.519 kb on + strand, within PFLU_RS02585at 593.520 kb on - strand, within PFLU_RS02585at 593.520 kb on - strand, within PFLU_RS02585at 593.528 kb on + strand, within PFLU_RS02585at 593.529 kb on - strand, within PFLU_RS02585at 593.529 kb on - strand, within PFLU_RS02585at 593.533 kb on + strand, within PFLU_RS02585at 593.533 kb on + strand, within PFLU_RS02585at 593.533 kb on + strand, within PFLU_RS02585at 593.534 kb on - strand, within PFLU_RS02585at 593.630 kb on + strandat 593.630 kb on + strandat 593.630 kb on + strandat 593.673 kb on + strandat 593.712 kb on + strandat 593.712 kb on + strandat 593.712 kb on + strandat 593.712 kb on + strandat 593.712 kb on + strandat 593.712 kb on + strandat 593.712 kb on + strandat 593.712 kb on + strandat 593.712 kb on + strandat 593.712 kb on + strandat 593.848 kb on + strandat 593.848 kb on + strandat 593.925 kb on + strandat 593.937 kb on + strandat 593.937 kb on + strandat 594.044 kb on + strandat 594.176 kb on - strand, within PFLU_RS02590at 594.242 kb on + strand, within PFLU_RS02590at 594.320 kb on + strand, within PFLU_RS02590at 594.320 kb on + strand, within PFLU_RS02590at 594.320 kb on + strand, within PFLU_RS02590at 594.320 kb on + strand, within PFLU_RS02590at 594.320 kb on + strand, within PFLU_RS02590at 594.321 kb on - strand, within PFLU_RS02590at 594.427 kb on + strand, within PFLU_RS02590at 594.427 kb on + strand, within PFLU_RS02590at 594.427 kb on + strand, within PFLU_RS02590at 594.431 kb on + strand, within PFLU_RS02590at 594.431 kb on + strand, within PFLU_RS02590at 594.431 kb on + strand, within PFLU_RS02590at 594.431 kb on + strand, within PFLU_RS02590at 594.431 kb on + strand, within PFLU_RS02590at 594.431 kb on + strand, within PFLU_RS02590at 594.432 kb on - strand, within PFLU_RS02590at 594.432 kb on - strand, within PFLU_RS02590at 594.432 kb on - strand, within PFLU_RS02590at 594.432 kb on - strand, within PFLU_RS02590at 594.520 kb on + strand, within PFLU_RS02590at 594.743 kb on + strand, within PFLU_RS02590at 594.749 kb on + strand, within PFLU_RS02590at 594.774 kb on + strand, within PFLU_RS02590at 594.775 kb on - strand, within PFLU_RS02590at 594.818 kb on + strand, within PFLU_RS02590at 594.818 kb on + strand, within PFLU_RS02590at 595.095 kb on + strandat 595.095 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction succinate (C); with MOPS
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592,928 + PFLU_RS02585 0.19 +0.2
592,928 + PFLU_RS02585 0.19 +0.7
592,928 + PFLU_RS02585 0.19 -0.3
592,929 - PFLU_RS02585 0.19 +2.0
592,929 - PFLU_RS02585 0.19 -0.7
592,929 - PFLU_RS02585 0.19 +0.3
592,929 - PFLU_RS02585 0.19 +0.7
592,981 + PFLU_RS02585 0.25 -1.5
592,981 + PFLU_RS02585 0.25 +1.0
592,981 + PFLU_RS02585 0.25 +1.3
592,981 + PFLU_RS02585 0.25 +0.7
592,982 - PFLU_RS02585 0.25 +0.7
592,982 - PFLU_RS02585 0.25 +1.3
592,982 - PFLU_RS02585 0.25 +1.3
592,982 - PFLU_RS02585 0.25 +2.3
592,982 - PFLU_RS02585 0.25 -0.9
592,982 - PFLU_RS02585 0.25 +0.3
592,982 - PFLU_RS02585 0.25 -0.9
593,031 - PFLU_RS02585 0.31 -0.0
593,066 + PFLU_RS02585 0.35 +2.0
593,066 + PFLU_RS02585 0.35 +2.3
593,066 + PFLU_RS02585 0.35 +0.3
593,066 + PFLU_RS02585 0.35 +0.7
593,066 + PFLU_RS02585 0.35 -0.2
593,066 + PFLU_RS02585 0.35 +1.7
593,067 - PFLU_RS02585 0.35 -0.2
593,149 + PFLU_RS02585 0.44 -0.9
593,150 - PFLU_RS02585 0.44 +0.7
593,318 - PFLU_RS02585 0.64 +1.9
593,318 - PFLU_RS02585 0.64 +1.7
593,318 - PFLU_RS02585 0.64 +0.3
593,383 + PFLU_RS02585 0.71 -0.4
593,383 + PFLU_RS02585 0.71 -0.7
593,383 + PFLU_RS02585 0.71 +2.3
593,415 + PFLU_RS02585 0.75 +0.0
593,415 + PFLU_RS02585 0.75 +1.5
593,415 + PFLU_RS02585 0.75 +0.2
593,415 + PFLU_RS02585 0.75 -0.7
593,416 - PFLU_RS02585 0.75 +0.7
593,486 + PFLU_RS02585 0.83 -1.0
593,487 - PFLU_RS02585 0.83 +1.7
593,487 - PFLU_RS02585 0.83 -1.3
593,498 + PFLU_RS02585 0.84 +1.3
593,519 + PFLU_RS02585 0.87 -2.1
593,519 + PFLU_RS02585 0.87 -0.3
593,520 - PFLU_RS02585 0.87 +0.3
593,520 - PFLU_RS02585 0.87 +1.3
593,528 + PFLU_RS02585 0.88 +0.8
593,529 - PFLU_RS02585 0.88 +0.3
593,529 - PFLU_RS02585 0.88 -1.0
593,533 + PFLU_RS02585 0.88 -0.6
593,533 + PFLU_RS02585 0.88 +2.1
593,533 + PFLU_RS02585 0.88 -0.5
593,534 - PFLU_RS02585 0.89 +0.3
593,630 + +0.5
593,630 + -0.4
593,630 + +1.3
593,673 + +1.5
593,712 + -1.2
593,712 + +0.3
593,712 + +0.7
593,712 + +0.4
593,712 + +1.7
593,712 + -1.7
593,712 + +0.1
593,712 + +0.6
593,712 + +0.3
593,712 + +0.4
593,848 + +0.3
593,848 + +0.5
593,925 + -2.3
593,937 + -4.0
593,937 + -0.2
594,044 + -2.0
594,176 - PFLU_RS02590 0.21 +1.3
594,242 + PFLU_RS02590 0.27 -2.6
594,320 + PFLU_RS02590 0.33 -0.1
594,320 + PFLU_RS02590 0.33 -2.2
594,320 + PFLU_RS02590 0.33 -1.7
594,320 + PFLU_RS02590 0.33 -3.1
594,320 + PFLU_RS02590 0.33 -2.2
594,321 - PFLU_RS02590 0.33 +1.3
594,427 + PFLU_RS02590 0.42 -2.3
594,427 + PFLU_RS02590 0.42 -1.4
594,427 + PFLU_RS02590 0.42 -2.7
594,431 + PFLU_RS02590 0.42 -2.2
594,431 + PFLU_RS02590 0.42 -2.7
594,431 + PFLU_RS02590 0.42 -2.6
594,431 + PFLU_RS02590 0.42 -2.7
594,431 + PFLU_RS02590 0.42 -2.9
594,431 + PFLU_RS02590 0.42 -3.7
594,432 - PFLU_RS02590 0.43 -0.0
594,432 - PFLU_RS02590 0.43 -0.0
594,432 - PFLU_RS02590 0.43 +1.3
594,432 - PFLU_RS02590 0.43 +0.7
594,520 + PFLU_RS02590 0.50 -1.2
594,743 + PFLU_RS02590 0.69 -2.4
594,749 + PFLU_RS02590 0.69 -3.3
594,774 + PFLU_RS02590 0.71 -2.3
594,775 - PFLU_RS02590 0.71 +2.3
594,818 + PFLU_RS02590 0.75 -1.6
594,818 + PFLU_RS02590 0.75 -2.3
595,095 + -0.8
595,095 + -0.8

Or see this region's nucleotide sequence