Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_2415 and EX28DRAFT_2416 overlap by 4 nucleotides EX28DRAFT_2416 and EX28DRAFT_2417 are separated by 105 nucleotides EX28DRAFT_2417 and EX28DRAFT_2418 overlap by 71 nucleotides
EX28DRAFT_2415: EX28DRAFT_2415 - AraC-type DNA-binding domain-containing proteins, at 2,438,395 to 2,439,189
_2415
EX28DRAFT_2416: EX28DRAFT_2416 - 2-dehydropantoate 2-reductase, at 2,439,186 to 2,440,076
_2416
EX28DRAFT_2417: EX28DRAFT_2417 - carboxylate-amine ligase, YbdK family, at 2,440,182 to 2,441,303
_2417
EX28DRAFT_2418: EX28DRAFT_2418 - The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family, at 2,441,233 to 2,444,388
_2418
Position (kb)
2440
2441
2442 Strain fitness (log2 ratio)
-2
-1
0
1 at 2439.449 kb on - strand, within EX28DRAFT_2416 at 2439.910 kb on - strand, within EX28DRAFT_2416 at 2439.954 kb on + strand, within EX28DRAFT_2416 at 2439.955 kb on - strand, within EX28DRAFT_2416 at 2440.112 kb on - strand at 2440.113 kb on + strand at 2440.114 kb on - strand at 2440.114 kb on - strand at 2440.148 kb on + strand at 2440.200 kb on - strand at 2440.527 kb on + strand, within EX28DRAFT_2417 at 2440.527 kb on + strand, within EX28DRAFT_2417 at 2440.529 kb on + strand, within EX28DRAFT_2417 at 2440.530 kb on - strand, within EX28DRAFT_2417 at 2440.577 kb on - strand, within EX28DRAFT_2417 at 2440.626 kb on + strand, within EX28DRAFT_2417 at 2440.627 kb on - strand, within EX28DRAFT_2417 at 2440.665 kb on - strand, within EX28DRAFT_2417 at 2440.689 kb on + strand, within EX28DRAFT_2417 at 2440.689 kb on + strand, within EX28DRAFT_2417 at 2440.689 kb on + strand, within EX28DRAFT_2417 at 2440.689 kb on + strand, within EX28DRAFT_2417 at 2440.691 kb on + strand, within EX28DRAFT_2417 at 2440.692 kb on - strand, within EX28DRAFT_2417 at 2440.692 kb on - strand, within EX28DRAFT_2417 at 2440.907 kb on + strand, within EX28DRAFT_2417 at 2440.990 kb on - strand, within EX28DRAFT_2417 at 2440.991 kb on + strand, within EX28DRAFT_2417 at 2440.992 kb on - strand, within EX28DRAFT_2417 at 2441.195 kb on - strand at 2441.583 kb on + strand, within EX28DRAFT_2418 at 2441.621 kb on - strand, within EX28DRAFT_2418 at 2441.629 kb on + strand, within EX28DRAFT_2418 at 2441.640 kb on - strand, within EX28DRAFT_2418 at 2441.640 kb on - strand, within EX28DRAFT_2418 at 2441.846 kb on + strand, within EX28DRAFT_2418 at 2441.846 kb on + strand, within EX28DRAFT_2418 at 2441.963 kb on + strand, within EX28DRAFT_2418 at 2441.964 kb on - strand, within EX28DRAFT_2418 at 2441.964 kb on - strand, within EX28DRAFT_2418 at 2442.113 kb on + strand, within EX28DRAFT_2418 at 2442.114 kb on - strand, within EX28DRAFT_2418
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 2,439,449 - EX28DRAFT_2416 0.30 -0.3 2,439,910 - EX28DRAFT_2416 0.81 -0.6 2,439,954 + EX28DRAFT_2416 0.86 -0.1 2,439,955 - EX28DRAFT_2416 0.86 +0.2 2,440,112 - -0.1 2,440,113 + -1.8 2,440,114 - -0.2 2,440,114 - -0.3 2,440,148 + -0.5 2,440,200 - +0.4 2,440,527 + EX28DRAFT_2417 0.31 +0.1 2,440,527 + EX28DRAFT_2417 0.31 -0.9 2,440,529 + EX28DRAFT_2417 0.31 -0.9 2,440,530 - EX28DRAFT_2417 0.31 -0.1 2,440,577 - EX28DRAFT_2417 0.35 -0.6 2,440,626 + EX28DRAFT_2417 0.40 -0.9 2,440,627 - EX28DRAFT_2417 0.40 +0.3 2,440,665 - EX28DRAFT_2417 0.43 -0.0 2,440,689 + EX28DRAFT_2417 0.45 -0.1 2,440,689 + EX28DRAFT_2417 0.45 -1.0 2,440,689 + EX28DRAFT_2417 0.45 -0.9 2,440,689 + EX28DRAFT_2417 0.45 -0.9 2,440,691 + EX28DRAFT_2417 0.45 +0.5 2,440,692 - EX28DRAFT_2417 0.45 +0.0 2,440,692 - EX28DRAFT_2417 0.45 +0.0 2,440,907 + EX28DRAFT_2417 0.65 -0.6 2,440,990 - EX28DRAFT_2417 0.72 +0.5 2,440,991 + EX28DRAFT_2417 0.72 -0.1 2,440,992 - EX28DRAFT_2417 0.72 +0.4 2,441,195 - -0.5 2,441,583 + EX28DRAFT_2418 0.11 +0.4 2,441,621 - EX28DRAFT_2418 0.12 -0.8 2,441,629 + EX28DRAFT_2418 0.13 +0.9 2,441,640 - EX28DRAFT_2418 0.13 +0.1 2,441,640 - EX28DRAFT_2418 0.13 +0.1 2,441,846 + EX28DRAFT_2418 0.19 +0.8 2,441,846 + EX28DRAFT_2418 0.19 +0.0 2,441,963 + EX28DRAFT_2418 0.23 -0.3 2,441,964 - EX28DRAFT_2418 0.23 -0.1 2,441,964 - EX28DRAFT_2418 0.23 -0.2 2,442,113 + EX28DRAFT_2418 0.28 +0.1 2,442,114 - EX28DRAFT_2418 0.28 -1.0
Or see this region's nucleotide sequence