Experiment: MS_media with arsenate 5 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1777 and EX28DRAFT_1778 are separated by 98 nucleotides EX28DRAFT_1778 and EX28DRAFT_1779 are separated by 267 nucleotides EX28DRAFT_1779 and EX28DRAFT_1780 overlap by 17 nucleotides EX28DRAFT_1780 and EX28DRAFT_1781 are separated by 99 nucleotides
EX28DRAFT_1777: EX28DRAFT_1777 - Uncharacterized conserved protein, at 1,793,594 to 1,794,895
_1777
EX28DRAFT_1778: EX28DRAFT_1778 - Uncharacterized conserved protein, at 1,794,994 to 1,795,494
_1778
EX28DRAFT_1779: EX28DRAFT_1779 - Predicted membrane protein, at 1,795,762 to 1,796,208
_1779
EX28DRAFT_1780: EX28DRAFT_1780 - AraC-type DNA-binding domain-containing proteins, at 1,796,192 to 1,796,983
_1780
EX28DRAFT_1781: EX28DRAFT_1781 - cyanate transporter, at 1,797,083 to 1,798,270
_1781
Position (kb)
1795
1796
1797 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1794.776 kb on + strand at 1794.838 kb on + strand at 1794.838 kb on + strand at 1794.838 kb on + strand at 1794.839 kb on - strand at 1794.842 kb on + strand at 1794.952 kb on - strand at 1794.957 kb on - strand at 1794.957 kb on - strand at 1794.968 kb on + strand at 1794.968 kb on + strand at 1794.969 kb on - strand at 1794.977 kb on - strand at 1794.977 kb on - strand at 1795.038 kb on + strand at 1795.039 kb on - strand at 1795.447 kb on + strand at 1795.584 kb on - strand at 1795.674 kb on + strand at 1795.685 kb on + strand at 1795.686 kb on - strand at 1795.730 kb on - strand at 1795.742 kb on + strand at 1795.762 kb on - strand at 1795.821 kb on + strand, within EX28DRAFT_1779 at 1795.857 kb on + strand, within EX28DRAFT_1779 at 1795.858 kb on - strand, within EX28DRAFT_1779 at 1795.881 kb on + strand, within EX28DRAFT_1779 at 1796.003 kb on + strand, within EX28DRAFT_1779 at 1796.206 kb on + strand at 1796.207 kb on - strand at 1796.222 kb on - strand at 1796.223 kb on + strand at 1796.223 kb on + strand at 1796.224 kb on - strand at 1796.267 kb on - strand at 1796.278 kb on + strand, within EX28DRAFT_1780 at 1796.278 kb on + strand, within EX28DRAFT_1780 at 1796.339 kb on + strand, within EX28DRAFT_1780 at 1796.339 kb on + strand, within EX28DRAFT_1780 at 1796.339 kb on + strand, within EX28DRAFT_1780 at 1796.513 kb on - strand, within EX28DRAFT_1780 at 1796.890 kb on + strand, within EX28DRAFT_1780 at 1796.892 kb on + strand, within EX28DRAFT_1780 at 1796.892 kb on + strand, within EX28DRAFT_1780 at 1796.893 kb on - strand, within EX28DRAFT_1780 at 1796.893 kb on - strand, within EX28DRAFT_1780 at 1796.959 kb on - strand at 1797.081 kb on + strand at 1797.081 kb on + strand at 1797.082 kb on - strand at 1797.088 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media with arsenate 5 mM remove 1,794,776 + -0.0 1,794,838 + +0.0 1,794,838 + -0.6 1,794,838 + +0.4 1,794,839 - +0.2 1,794,842 + -0.6 1,794,952 - -0.1 1,794,957 - +1.8 1,794,957 - -0.0 1,794,968 + -0.0 1,794,968 + +1.3 1,794,969 - +0.6 1,794,977 - +0.8 1,794,977 - -0.0 1,795,038 + -0.7 1,795,039 - +0.1 1,795,447 + +0.2 1,795,584 - -1.2 1,795,674 + -0.1 1,795,685 + +1.0 1,795,686 - +0.3 1,795,730 - +0.4 1,795,742 + +1.7 1,795,762 - -0.1 1,795,821 + EX28DRAFT_1779 0.13 +1.0 1,795,857 + EX28DRAFT_1779 0.21 +0.3 1,795,858 - EX28DRAFT_1779 0.21 +0.2 1,795,881 + EX28DRAFT_1779 0.27 -0.2 1,796,003 + EX28DRAFT_1779 0.54 +0.3 1,796,206 + -0.3 1,796,207 - -0.1 1,796,222 - -1.0 1,796,223 + -0.8 1,796,223 + -0.4 1,796,224 - -0.5 1,796,267 - -0.6 1,796,278 + EX28DRAFT_1780 0.11 +0.0 1,796,278 + EX28DRAFT_1780 0.11 -0.2 1,796,339 + EX28DRAFT_1780 0.19 -0.3 1,796,339 + EX28DRAFT_1780 0.19 -0.1 1,796,339 + EX28DRAFT_1780 0.19 +0.1 1,796,513 - EX28DRAFT_1780 0.41 +0.6 1,796,890 + EX28DRAFT_1780 0.88 +1.3 1,796,892 + EX28DRAFT_1780 0.88 -2.4 1,796,892 + EX28DRAFT_1780 0.88 -0.1 1,796,893 - EX28DRAFT_1780 0.89 +0.4 1,796,893 - EX28DRAFT_1780 0.89 -0.0 1,796,959 - +1.0 1,797,081 + -1.6 1,797,081 + -2.4 1,797,082 - +0.1 1,797,088 + +0.1
Or see this region's nucleotide sequence