Experiment: L-Asparagine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS26105 and ABID97_RS26110 overlap by 4 nucleotides ABID97_RS26110 and ABID97_RS26115 are separated by 108 nucleotides ABID97_RS26115 and ABID97_RS26120 are separated by 51 nucleotides
ABID97_RS26105: ABID97_RS26105 - sterol desaturase family protein, at 145,048 to 145,953
_RS26105
ABID97_RS26110: ABID97_RS26110 - coniferyl aldehyde dehydrogenase, at 145,950 to 147,401
_RS26110
ABID97_RS26115: ABID97_RS26115 - hypothetical protein, at 147,510 to 147,854
_RS26115
ABID97_RS26120: ABID97_RS26120 - hypothetical protein, at 147,906 to 149,237
_RS26120
Position (kb) 145
146
147
148 Strain fitness (log2 ratio) -1
0
1 at 145.399 kb on + strand, within ABID97_RS26105 at 145.514 kb on - strand, within ABID97_RS26105 at 145.690 kb on + strand, within ABID97_RS26105 at 145.691 kb on - strand, within ABID97_RS26105 at 145.831 kb on + strand, within ABID97_RS26105 at 147.049 kb on - strand, within ABID97_RS26110 at 147.108 kb on + strand, within ABID97_RS26110 at 147.252 kb on + strand, within ABID97_RS26110 at 147.253 kb on - strand, within ABID97_RS26110 at 147.382 kb on - strand at 147.382 kb on - strand at 147.853 kb on - strand at 147.995 kb on - strand at 148.316 kb on - strand, within ABID97_RS26120
Per-strain Table
Position Strand Gene LocusTag Fraction L-Asparagine (C) remove 145,399 + ABID97_RS26105 0.39 +0.2 145,514 - ABID97_RS26105 0.51 +0.5 145,690 + ABID97_RS26105 0.71 +0.2 145,691 - ABID97_RS26105 0.71 +0.5 145,831 + ABID97_RS26105 0.86 -1.2 147,049 - ABID97_RS26110 0.76 -0.2 147,108 + ABID97_RS26110 0.80 +0.3 147,252 + ABID97_RS26110 0.90 -0.1 147,253 - ABID97_RS26110 0.90 +0.8 147,382 - +0.4 147,382 - +0.5 147,853 - -0.2 147,995 - +0.3 148,316 - ABID97_RS26120 0.31 +0.0
Or see this region's nucleotide sequence