Strain Fitness in Sinorhizobium meliloti 1021 around SMc00466

Experiment: Beta-Lactose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00467 and SMc00466 overlap by 4 nucleotidesSMc00466 and SMc00548 are separated by 134 nucleotidesSMc00548 and SMc00465 are separated by 39 nucleotides SMc00467: SMc00467 - hypothetical protein, at 1,957,621 to 1,959,120 SMc00467 SMc00466: SMc00466 - hypothetical protein, at 1,959,117 to 1,960,196 SMc00466 SMc00548: SMc00548 - signal peptide protein, at 1,960,331 to 1,960,882 SMc00548 SMc00465: SMc00465 - 7, 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase, at 1,960,922 to 1,961,446 SMc00465 Position (kb) 1959 1960 1961Strain fitness (log2 ratio) -2 -1 0 1at 1958.236 kb on + strand, within SMc00467at 1958.237 kb on - strand, within SMc00467at 1958.407 kb on + strand, within SMc00467at 1958.417 kb on - strand, within SMc00467at 1958.417 kb on - strand, within SMc00467at 1958.433 kb on - strand, within SMc00467at 1959.230 kb on + strand, within SMc00466at 1959.450 kb on + strand, within SMc00466at 1959.846 kb on + strand, within SMc00466at 1959.847 kb on - strand, within SMc00466at 1959.886 kb on - strand, within SMc00466at 1959.886 kb on - strand, within SMc00466at 1960.880 kb on + strandat 1960.923 kb on + strandat 1960.923 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Beta-Lactose (C)
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1,958,236 + SMc00467 0.41 +0.1
1,958,237 - SMc00467 0.41 +0.1
1,958,407 + SMc00467 0.52 +0.1
1,958,417 - SMc00467 0.53 -0.4
1,958,417 - SMc00467 0.53 -0.5
1,958,433 - SMc00467 0.54 -0.7
1,959,230 + SMc00466 0.10 -1.0
1,959,450 + SMc00466 0.31 -0.3
1,959,846 + SMc00466 0.68 -0.8
1,959,847 - SMc00466 0.68 -1.0
1,959,886 - SMc00466 0.71 -0.2
1,959,886 - SMc00466 0.71 -0.5
1,960,880 + -0.1
1,960,923 + -0.1
1,960,923 + -1.8

Or see this region's nucleotide sequence