Experiment: Trisodium citrate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt OH686_02235 and OH686_02240 are separated by 84 nucleotides OH686_02240 and OH686_02245 are separated by 182 nucleotides
OH686_02235: OH686_02235 - oxygen-independent coproporphyrinogen III oxidase, at 479,670 to 481,052
_02235
OH686_02240: OH686_02240 - hypothetical protein, at 481,137 to 481,601
_02240
OH686_02245: OH686_02245 - Fumarate and nitrate reduction regulatory protein, at 481,784 to 482,518
_02245
Position (kb) 481
482 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 480.315 kb on + strand, within OH686_02235 at 480.315 kb on + strand, within OH686_02235 at 480.315 kb on + strand, within OH686_02235 at 480.315 kb on + strand, within OH686_02235 at 480.315 kb on + strand, within OH686_02235 at 480.315 kb on + strand, within OH686_02235 at 480.316 kb on - strand, within OH686_02235 at 480.316 kb on - strand, within OH686_02235 at 480.316 kb on - strand, within OH686_02235 at 480.316 kb on - strand, within OH686_02235 at 480.316 kb on - strand, within OH686_02235 at 480.316 kb on - strand, within OH686_02235 at 480.405 kb on + strand, within OH686_02235 at 480.405 kb on + strand, within OH686_02235 at 480.405 kb on + strand, within OH686_02235 at 480.405 kb on + strand, within OH686_02235 at 480.405 kb on + strand, within OH686_02235 at 480.406 kb on - strand, within OH686_02235 at 480.406 kb on - strand, within OH686_02235 at 480.428 kb on + strand, within OH686_02235 at 480.428 kb on + strand, within OH686_02235 at 480.429 kb on - strand, within OH686_02235 at 480.531 kb on + strand, within OH686_02235 at 480.531 kb on + strand, within OH686_02235 at 480.531 kb on + strand, within OH686_02235 at 480.531 kb on + strand, within OH686_02235 at 480.531 kb on + strand, within OH686_02235 at 480.531 kb on + strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.532 kb on - strand, within OH686_02235 at 480.534 kb on - strand, within OH686_02235 at 480.534 kb on - strand, within OH686_02235 at 480.618 kb on + strand, within OH686_02235 at 480.618 kb on + strand, within OH686_02235 at 480.618 kb on + strand, within OH686_02235 at 480.619 kb on - strand, within OH686_02235 at 480.619 kb on - strand, within OH686_02235 at 480.687 kb on + strand, within OH686_02235 at 480.687 kb on + strand, within OH686_02235 at 480.687 kb on + strand, within OH686_02235 at 480.688 kb on - strand, within OH686_02235 at 480.688 kb on - strand, within OH686_02235 at 480.688 kb on - strand, within OH686_02235 at 480.688 kb on - strand, within OH686_02235 at 480.688 kb on - strand, within OH686_02235 at 480.717 kb on + strand, within OH686_02235 at 480.717 kb on + strand, within OH686_02235 at 480.718 kb on - strand, within OH686_02235 at 480.876 kb on + strand, within OH686_02235 at 480.876 kb on + strand, within OH686_02235 at 480.876 kb on + strand, within OH686_02235 at 480.876 kb on + strand, within OH686_02235 at 480.876 kb on + strand, within OH686_02235 at 480.877 kb on - strand, within OH686_02235 at 480.877 kb on - strand, within OH686_02235 at 480.877 kb on - strand, within OH686_02235 at 480.877 kb on - strand, within OH686_02235 at 480.877 kb on - strand, within OH686_02235 at 480.877 kb on - strand, within OH686_02235 at 480.979 kb on + strand at 480.979 kb on + strand at 480.979 kb on + strand at 480.979 kb on + strand at 480.980 kb on - strand at 480.980 kb on - strand at 480.980 kb on - strand at 481.120 kb on + strand at 481.120 kb on + strand at 481.120 kb on + strand at 481.120 kb on + strand at 481.120 kb on + strand at 481.120 kb on + strand at 481.120 kb on + strand at 481.121 kb on - strand at 481.121 kb on - strand at 481.121 kb on - strand at 481.121 kb on - strand at 481.121 kb on - strand at 481.470 kb on + strand, within OH686_02240 at 481.590 kb on + strand at 481.591 kb on - strand at 481.688 kb on + strand at 481.688 kb on + strand at 481.688 kb on + strand at 481.688 kb on + strand at 481.688 kb on + strand at 481.688 kb on + strand at 481.688 kb on + strand at 481.689 kb on - strand at 481.689 kb on - strand at 481.689 kb on - strand at 481.692 kb on + strand at 481.692 kb on + strand at 481.692 kb on + strand at 481.692 kb on + strand at 481.692 kb on + strand at 481.692 kb on + strand at 481.692 kb on + strand at 481.692 kb on + strand at 481.692 kb on + strand at 481.692 kb on + strand at 481.692 kb on + strand at 481.692 kb on + strand at 481.692 kb on + strand at 481.692 kb on + strand at 481.692 kb on + strand at 481.693 kb on - strand at 481.693 kb on - strand at 481.693 kb on - strand at 481.693 kb on - strand at 481.693 kb on - strand at 481.693 kb on - strand at 481.693 kb on - strand at 481.693 kb on - strand at 481.743 kb on - strand at 481.803 kb on + strand at 481.803 kb on + strand at 481.803 kb on + strand at 481.803 kb on + strand at 481.803 kb on + strand at 481.803 kb on + strand at 481.803 kb on + strand at 481.804 kb on - strand at 481.804 kb on - strand at 481.804 kb on - strand at 481.804 kb on - strand at 481.804 kb on - strand at 481.804 kb on - strand at 481.958 kb on - strand, within OH686_02245 at 481.958 kb on - strand, within OH686_02245 at 482.375 kb on + strand, within OH686_02245 at 482.375 kb on + strand, within OH686_02245 at 482.375 kb on + strand, within OH686_02245 at 482.375 kb on + strand, within OH686_02245 at 482.375 kb on + strand, within OH686_02245 at 482.375 kb on + strand, within OH686_02245 at 482.375 kb on + strand, within OH686_02245 at 482.375 kb on + strand, within OH686_02245 at 482.375 kb on + strand, within OH686_02245 at 482.375 kb on + strand, within OH686_02245 at 482.375 kb on + strand, within OH686_02245 at 482.375 kb on + strand, within OH686_02245 at 482.375 kb on + strand, within OH686_02245 at 482.375 kb on + strand, within OH686_02245 at 482.376 kb on - strand, within OH686_02245 at 482.376 kb on - strand, within OH686_02245 at 482.376 kb on - strand, within OH686_02245 at 482.376 kb on - strand, within OH686_02245 at 482.376 kb on - strand, within OH686_02245 at 482.376 kb on - strand, within OH686_02245 at 482.376 kb on - strand, within OH686_02245 at 482.376 kb on - strand, within OH686_02245 at 482.460 kb on + strand at 482.460 kb on + strand at 482.460 kb on + strand at 482.460 kb on + strand at 482.460 kb on + strand at 482.461 kb on - strand at 482.461 kb on - strand at 482.461 kb on - strand at 482.461 kb on - strand at 482.461 kb on - strand at 482.461 kb on - strand at 482.461 kb on - strand at 482.461 kb on - strand at 482.506 kb on + strand at 482.506 kb on + strand at 482.506 kb on + strand at 482.506 kb on + strand at 482.506 kb on + strand at 482.506 kb on + strand at 482.507 kb on - strand at 482.507 kb on - strand at 482.507 kb on - strand at 482.507 kb on - strand at 482.507 kb on - strand at 482.507 kb on - strand at 482.559 kb on + strand at 482.584 kb on + strand at 482.584 kb on + strand at 482.584 kb on + strand at 482.584 kb on + strand at 482.584 kb on + strand at 482.584 kb on + strand at 482.584 kb on + strand at 482.585 kb on - strand at 482.585 kb on - strand at 482.585 kb on - strand at 482.585 kb on - strand at 482.585 kb on - strand at 482.585 kb on - strand at 482.585 kb on - strand at 482.593 kb on + strand at 482.594 kb on - strand at 482.594 kb on - strand at 482.594 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Trisodium citrate (C) remove 480,315 + OH686_02235 0.47 -0.2 480,315 + OH686_02235 0.47 -1.3 480,315 + OH686_02235 0.47 +0.7 480,315 + OH686_02235 0.47 +0.2 480,315 + OH686_02235 0.47 +1.3 480,315 + OH686_02235 0.47 -0.7 480,316 - OH686_02235 0.47 -0.6 480,316 - OH686_02235 0.47 +1.0 480,316 - OH686_02235 0.47 -0.6 480,316 - OH686_02235 0.47 +0.7 480,316 - OH686_02235 0.47 -0.7 480,316 - OH686_02235 0.47 +1.2 480,405 + OH686_02235 0.53 -0.6 480,405 + OH686_02235 0.53 -2.1 480,405 + OH686_02235 0.53 -0.5 480,405 + OH686_02235 0.53 -0.5 480,405 + OH686_02235 0.53 -0.1 480,406 - OH686_02235 0.53 +0.3 480,406 - OH686_02235 0.53 -1.7 480,428 + OH686_02235 0.55 -1.2 480,428 + OH686_02235 0.55 +0.1 480,429 - OH686_02235 0.55 -0.7 480,531 + OH686_02235 0.62 -1.7 480,531 + OH686_02235 0.62 -0.5 480,531 + OH686_02235 0.62 +0.1 480,531 + OH686_02235 0.62 +0.4 480,531 + OH686_02235 0.62 +0.4 480,531 + OH686_02235 0.62 +0.6 480,532 - OH686_02235 0.62 -1.3 480,532 - OH686_02235 0.62 -0.1 480,532 - OH686_02235 0.62 -0.7 480,532 - OH686_02235 0.62 -0.3 480,532 - OH686_02235 0.62 +0.1 480,532 - OH686_02235 0.62 -0.2 480,532 - OH686_02235 0.62 -1.6 480,532 - OH686_02235 0.62 -0.5 480,532 - OH686_02235 0.62 -0.6 480,532 - OH686_02235 0.62 -0.0 480,532 - OH686_02235 0.62 +0.2 480,532 - OH686_02235 0.62 -0.6 480,532 - OH686_02235 0.62 +1.7 480,534 - OH686_02235 0.62 -0.9 480,534 - OH686_02235 0.62 -0.1 480,618 + OH686_02235 0.69 -0.5 480,618 + OH686_02235 0.69 -0.1 480,618 + OH686_02235 0.69 -0.6 480,619 - OH686_02235 0.69 -0.3 480,619 - OH686_02235 0.69 -0.8 480,687 + OH686_02235 0.74 -0.9 480,687 + OH686_02235 0.74 -0.2 480,687 + OH686_02235 0.74 -0.9 480,688 - OH686_02235 0.74 +0.9 480,688 - OH686_02235 0.74 +0.7 480,688 - OH686_02235 0.74 -0.5 480,688 - OH686_02235 0.74 +0.9 480,688 - OH686_02235 0.74 -1.0 480,717 + OH686_02235 0.76 -0.1 480,717 + OH686_02235 0.76 -1.1 480,718 - OH686_02235 0.76 +0.4 480,876 + OH686_02235 0.87 +0.9 480,876 + OH686_02235 0.87 -0.2 480,876 + OH686_02235 0.87 -2.2 480,876 + OH686_02235 0.87 -0.3 480,876 + OH686_02235 0.87 -0.5 480,877 - OH686_02235 0.87 -1.0 480,877 - OH686_02235 0.87 -0.7 480,877 - OH686_02235 0.87 -1.6 480,877 - OH686_02235 0.87 +0.4 480,877 - OH686_02235 0.87 -0.2 480,877 - OH686_02235 0.87 +1.2 480,979 + -0.1 480,979 + +0.2 480,979 + +0.7 480,979 + +0.8 480,980 - -0.2 480,980 - +0.2 480,980 - +0.8 481,120 + -0.3 481,120 + +0.3 481,120 + +0.7 481,120 + +1.1 481,120 + +0.8 481,120 + +0.5 481,120 + -1.7 481,121 - +1.3 481,121 - +0.4 481,121 - +0.5 481,121 - -0.4 481,121 - -0.4 481,470 + OH686_02240 0.72 -0.0 481,590 + -0.8 481,591 - +0.8 481,688 + +1.7 481,688 + -2.8 481,688 + -0.5 481,688 + +0.3 481,688 + -0.6 481,688 + +0.1 481,688 + +0.3 481,689 - -0.1 481,689 - +0.0 481,689 - -0.5 481,692 + -0.8 481,692 + -0.6 481,692 + -0.1 481,692 + +0.1 481,692 + -0.4 481,692 + -0.2 481,692 + -0.2 481,692 + +0.5 481,692 + -2.3 481,692 + +0.7 481,692 + -0.2 481,692 + +0.9 481,692 + +0.9 481,692 + +0.1 481,692 + +0.9 481,693 - -0.9 481,693 - +0.8 481,693 - -0.1 481,693 - -0.2 481,693 - +0.0 481,693 - +0.1 481,693 - +0.1 481,693 - +0.2 481,743 - +0.3 481,803 + +0.9 481,803 + +0.2 481,803 + +0.6 481,803 + -0.4 481,803 + +0.4 481,803 + +0.5 481,803 + -0.6 481,804 - +0.3 481,804 - +0.1 481,804 - +0.9 481,804 - -1.7 481,804 - +0.7 481,804 - -0.2 481,958 - OH686_02245 0.24 +0.7 481,958 - OH686_02245 0.24 +1.1 482,375 + OH686_02245 0.80 +0.5 482,375 + OH686_02245 0.80 -0.9 482,375 + OH686_02245 0.80 +0.8 482,375 + OH686_02245 0.80 +0.8 482,375 + OH686_02245 0.80 +1.4 482,375 + OH686_02245 0.80 -1.1 482,375 + OH686_02245 0.80 +0.8 482,375 + OH686_02245 0.80 -0.6 482,375 + OH686_02245 0.80 -0.0 482,375 + OH686_02245 0.80 -0.1 482,375 + OH686_02245 0.80 -0.9 482,375 + OH686_02245 0.80 -0.1 482,375 + OH686_02245 0.80 -0.5 482,375 + OH686_02245 0.80 +0.1 482,376 - OH686_02245 0.81 +0.3 482,376 - OH686_02245 0.81 +0.8 482,376 - OH686_02245 0.81 +1.6 482,376 - OH686_02245 0.81 -1.9 482,376 - OH686_02245 0.81 +0.9 482,376 - OH686_02245 0.81 +1.1 482,376 - OH686_02245 0.81 +0.6 482,376 - OH686_02245 0.81 +0.4 482,460 + +0.1 482,460 + +1.7 482,460 + +1.1 482,460 + +0.4 482,460 + +0.2 482,461 - +1.0 482,461 - +0.3 482,461 - +1.9 482,461 - +0.2 482,461 - +0.6 482,461 - +0.3 482,461 - +1.1 482,461 - +0.2 482,506 + -0.2 482,506 + +1.1 482,506 + +1.1 482,506 + +1.7 482,506 + -0.7 482,506 + -0.0 482,507 - +0.2 482,507 - +0.1 482,507 - +0.1 482,507 - -0.6 482,507 - -0.5 482,507 - -0.5 482,559 + -0.7 482,584 + +0.8 482,584 + -0.5 482,584 + +1.1 482,584 + +0.1 482,584 + +0.4 482,584 + -0.2 482,584 + -0.8 482,585 - +0.8 482,585 - -1.1 482,585 - -0.7 482,585 - -0.7 482,585 - +0.3 482,585 - +0.8 482,585 - +2.4 482,593 + -0.5 482,594 - +0.1 482,594 - +0.3 482,594 - +0.3
Or see this region's nucleotide sequence