Strain Fitness in Echinicola vietnamensis KMM 6221, DSM 17526 around Echvi_1754

Experiment: m.b. Zinc 0.5 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEchvi_1753 and Echvi_1754 are separated by 332 nucleotidesEchvi_1754 and Echvi_1755 are separated by 128 nucleotides Echvi_1753: Echvi_1753 - chaperone protein DnaK, at 2,064,142 to 2,066,082 _1753 Echvi_1754: Echvi_1754 - Co-chaperonin GroES (HSP10), at 2,066,415 to 2,066,789 _1754 Echvi_1755: Echvi_1755 - ABC-type multidrug transport system, ATPase and permease components, at 2,066,918 to 2,068,708 _1755 Position (kb) 2066 2067Strain fitness (log2 ratio) -2 -1 0 1at 2065.936 kb on + strandat 2065.936 kb on + strandat 2065.936 kb on + strandat 2065.936 kb on + strandat 2065.937 kb on - strandat 2065.937 kb on - strandat 2065.937 kb on - strandat 2066.050 kb on + strandat 2066.080 kb on + strandat 2066.153 kb on - strandat 2066.301 kb on + strandat 2066.302 kb on - strandat 2066.303 kb on + strandat 2066.304 kb on - strandat 2066.314 kb on + strandat 2066.315 kb on - strandat 2066.372 kb on + strandat 2066.373 kb on - strandat 2066.373 kb on - strandat 2066.435 kb on + strandat 2066.436 kb on - strandat 2066.515 kb on + strand, within Echvi_1754at 2066.515 kb on + strand, within Echvi_1754at 2066.515 kb on + strand, within Echvi_1754at 2066.516 kb on - strand, within Echvi_1754at 2066.518 kb on - strand, within Echvi_1754at 2066.551 kb on + strand, within Echvi_1754at 2066.551 kb on + strand, within Echvi_1754at 2066.562 kb on + strand, within Echvi_1754at 2066.562 kb on + strand, within Echvi_1754at 2066.563 kb on - strand, within Echvi_1754at 2066.606 kb on - strand, within Echvi_1754at 2066.686 kb on + strand, within Echvi_1754at 2066.686 kb on + strand, within Echvi_1754at 2066.687 kb on - strand, within Echvi_1754at 2066.687 kb on - strand, within Echvi_1754at 2066.687 kb on - strand, within Echvi_1754at 2066.718 kb on + strand, within Echvi_1754at 2066.718 kb on + strand, within Echvi_1754at 2066.736 kb on + strand, within Echvi_1754at 2066.790 kb on + strandat 2066.790 kb on + strandat 2066.805 kb on - strandat 2066.809 kb on - strandat 2066.845 kb on - strandat 2066.845 kb on - strandat 2066.895 kb on + strandat 2066.896 kb on - strandat 2066.898 kb on - strandat 2066.919 kb on + strandat 2066.971 kb on - strandat 2067.180 kb on - strand, within Echvi_1755at 2067.242 kb on - strand, within Echvi_1755at 2067.308 kb on + strand, within Echvi_1755at 2067.309 kb on - strand, within Echvi_1755at 2067.309 kb on - strand, within Echvi_1755at 2067.420 kb on + strand, within Echvi_1755at 2067.454 kb on - strand, within Echvi_1755at 2067.462 kb on - strand, within Echvi_1755at 2067.462 kb on - strand, within Echvi_1755at 2067.505 kb on - strand, within Echvi_1755at 2067.630 kb on + strand, within Echvi_1755at 2067.641 kb on + strand, within Echvi_1755at 2067.641 kb on + strand, within Echvi_1755at 2067.642 kb on - strand, within Echvi_1755at 2067.679 kb on + strand, within Echvi_1755

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. Zinc 0.5 mM
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2,065,936 + +0.1
2,065,936 + +0.1
2,065,936 + -0.3
2,065,936 + +0.4
2,065,937 - -1.4
2,065,937 - -0.6
2,065,937 - +0.2
2,066,050 + +0.4
2,066,080 + -0.7
2,066,153 - +0.8
2,066,301 + -1.0
2,066,302 - +0.5
2,066,303 + +0.8
2,066,304 - +0.4
2,066,314 + -0.3
2,066,315 - +0.3
2,066,372 + -1.6
2,066,373 - -0.1
2,066,373 - -0.3
2,066,435 + -0.3
2,066,436 - -0.0
2,066,515 + Echvi_1754 0.27 -0.2
2,066,515 + Echvi_1754 0.27 -1.2
2,066,515 + Echvi_1754 0.27 -0.6
2,066,516 - Echvi_1754 0.27 -0.5
2,066,518 - Echvi_1754 0.27 -0.0
2,066,551 + Echvi_1754 0.36 +1.5
2,066,551 + Echvi_1754 0.36 -1.4
2,066,562 + Echvi_1754 0.39 -0.2
2,066,562 + Echvi_1754 0.39 -0.9
2,066,563 - Echvi_1754 0.39 +1.3
2,066,606 - Echvi_1754 0.51 +1.5
2,066,686 + Echvi_1754 0.72 -1.3
2,066,686 + Echvi_1754 0.72 -1.2
2,066,687 - Echvi_1754 0.73 -1.3
2,066,687 - Echvi_1754 0.73 +0.1
2,066,687 - Echvi_1754 0.73 -1.2
2,066,718 + Echvi_1754 0.81 -0.4
2,066,718 + Echvi_1754 0.81 -0.3
2,066,736 + Echvi_1754 0.86 -0.8
2,066,790 + +0.5
2,066,790 + -1.4
2,066,805 - -0.5
2,066,809 - -1.3
2,066,845 - -2.6
2,066,845 - +1.0
2,066,895 + -0.2
2,066,896 - -0.6
2,066,898 - +0.5
2,066,919 + -0.9
2,066,971 - -0.4
2,067,180 - Echvi_1755 0.15 +0.3
2,067,242 - Echvi_1755 0.18 +0.4
2,067,308 + Echvi_1755 0.22 -0.2
2,067,309 - Echvi_1755 0.22 +0.3
2,067,309 - Echvi_1755 0.22 -0.7
2,067,420 + Echvi_1755 0.28 +0.9
2,067,454 - Echvi_1755 0.30 +0.3
2,067,462 - Echvi_1755 0.30 -0.6
2,067,462 - Echvi_1755 0.30 -1.6
2,067,505 - Echvi_1755 0.33 +0.2
2,067,630 + Echvi_1755 0.40 +0.7
2,067,641 + Echvi_1755 0.40 +0.2
2,067,641 + Echvi_1755 0.40 -1.0
2,067,642 - Echvi_1755 0.40 +0.3
2,067,679 + Echvi_1755 0.42 +0.2

Or see this region's nucleotide sequence