Experiment: R2A
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CA265_RS01060 and CA265_RS01065 are separated by 71 nucleotides CA265_RS01065 and CA265_RS01070 are separated by 312 nucleotides CA265_RS01070 and CA265_RS01075 overlap by 12 nucleotides
CA265_RS01060: CA265_RS01060 - alpha-mannosidase, at 270,501 to 272,585
_RS01060
CA265_RS01065: CA265_RS01065 - hypothetical protein, at 272,657 to 272,848
_RS01065
CA265_RS01070: CA265_RS01070 - NUDIX hydrolase, at 273,161 to 273,619
_RS01070
CA265_RS01075: CA265_RS01075 - DNA alkylation repair protein, at 273,608 to 274,711
_RS01075
Position (kb) 272
273 Strain fitness (log2 ratio) -2
-1
0
1 at 271.662 kb on + strand, within CA265_RS01060 at 271.737 kb on - strand, within CA265_RS01060 at 271.737 kb on - strand, within CA265_RS01060 at 271.737 kb on - strand, within CA265_RS01060 at 271.830 kb on + strand, within CA265_RS01060 at 271.851 kb on + strand, within CA265_RS01060 at 271.924 kb on + strand, within CA265_RS01060 at 271.924 kb on + strand, within CA265_RS01060 at 272.010 kb on + strand, within CA265_RS01060 at 272.010 kb on + strand, within CA265_RS01060 at 272.011 kb on - strand, within CA265_RS01060 at 272.051 kb on + strand, within CA265_RS01060 at 272.051 kb on + strand, within CA265_RS01060 at 272.060 kb on + strand, within CA265_RS01060 at 272.091 kb on + strand, within CA265_RS01060 at 272.092 kb on - strand, within CA265_RS01060 at 272.093 kb on + strand, within CA265_RS01060 at 272.202 kb on - strand, within CA265_RS01060 at 272.235 kb on + strand, within CA265_RS01060 at 272.244 kb on - strand, within CA265_RS01060 at 272.281 kb on - strand, within CA265_RS01060 at 272.368 kb on - strand, within CA265_RS01060 at 272.430 kb on + strand at 272.468 kb on + strand at 272.475 kb on + strand at 272.692 kb on + strand, within CA265_RS01065 at 272.692 kb on + strand, within CA265_RS01065 at 272.697 kb on + strand, within CA265_RS01065 at 272.761 kb on + strand, within CA265_RS01065 at 272.819 kb on + strand, within CA265_RS01065 at 272.835 kb on - strand at 272.876 kb on + strand at 272.876 kb on + strand at 272.883 kb on + strand at 272.883 kb on + strand at 272.932 kb on + strand at 272.932 kb on + strand at 272.932 kb on + strand at 272.971 kb on - strand at 273.100 kb on + strand at 273.101 kb on - strand at 273.154 kb on + strand at 273.276 kb on + strand, within CA265_RS01070 at 273.277 kb on - strand, within CA265_RS01070 at 273.323 kb on - strand, within CA265_RS01070 at 273.334 kb on + strand, within CA265_RS01070 at 273.335 kb on - strand, within CA265_RS01070 at 273.412 kb on - strand, within CA265_RS01070 at 273.464 kb on - strand, within CA265_RS01070 at 273.520 kb on - strand, within CA265_RS01070 at 273.524 kb on - strand, within CA265_RS01070 at 273.548 kb on - strand, within CA265_RS01070 at 273.556 kb on + strand, within CA265_RS01070 at 273.561 kb on - strand, within CA265_RS01070 at 273.609 kb on + strand at 273.609 kb on + strand at 273.610 kb on - strand at 273.774 kb on + strand, within CA265_RS01075 at 273.811 kb on - strand, within CA265_RS01075 at 273.818 kb on - strand, within CA265_RS01075 at 273.822 kb on + strand, within CA265_RS01075
Per-strain Table
Position Strand Gene LocusTag Fraction R2A remove 271,662 + CA265_RS01060 0.56 +0.0 271,737 - CA265_RS01060 0.59 -0.5 271,737 - CA265_RS01060 0.59 -0.8 271,737 - CA265_RS01060 0.59 +0.1 271,830 + CA265_RS01060 0.64 +0.9 271,851 + CA265_RS01060 0.65 -1.1 271,924 + CA265_RS01060 0.68 -0.6 271,924 + CA265_RS01060 0.68 -0.1 272,010 + CA265_RS01060 0.72 -0.5 272,010 + CA265_RS01060 0.72 +0.8 272,011 - CA265_RS01060 0.72 -0.2 272,051 + CA265_RS01060 0.74 +0.7 272,051 + CA265_RS01060 0.74 -1.9 272,060 + CA265_RS01060 0.75 -0.5 272,091 + CA265_RS01060 0.76 -0.4 272,092 - CA265_RS01060 0.76 -0.7 272,093 + CA265_RS01060 0.76 -1.3 272,202 - CA265_RS01060 0.82 -0.2 272,235 + CA265_RS01060 0.83 -0.6 272,244 - CA265_RS01060 0.84 +0.6 272,281 - CA265_RS01060 0.85 +0.7 272,368 - CA265_RS01060 0.90 -0.4 272,430 + +0.7 272,468 + -0.3 272,475 + +0.1 272,692 + CA265_RS01065 0.18 -0.8 272,692 + CA265_RS01065 0.18 -0.7 272,697 + CA265_RS01065 0.21 -0.7 272,761 + CA265_RS01065 0.54 -1.9 272,819 + CA265_RS01065 0.84 -0.4 272,835 - -1.0 272,876 + -0.6 272,876 + +0.4 272,883 + -0.5 272,883 + -0.3 272,932 + -0.7 272,932 + -0.1 272,932 + +0.1 272,971 - +0.1 273,100 + -1.4 273,101 - -0.6 273,154 + +1.7 273,276 + CA265_RS01070 0.25 -0.1 273,277 - CA265_RS01070 0.25 -1.1 273,323 - CA265_RS01070 0.35 +0.6 273,334 + CA265_RS01070 0.38 -0.7 273,335 - CA265_RS01070 0.38 -1.0 273,412 - CA265_RS01070 0.55 -0.4 273,464 - CA265_RS01070 0.66 -0.4 273,520 - CA265_RS01070 0.78 -0.5 273,524 - CA265_RS01070 0.79 +0.7 273,548 - CA265_RS01070 0.84 -0.5 273,556 + CA265_RS01070 0.86 -0.4 273,561 - CA265_RS01070 0.87 +0.7 273,609 + -0.1 273,609 + -0.5 273,610 - -0.3 273,774 + CA265_RS01075 0.15 -0.1 273,811 - CA265_RS01075 0.18 -0.6 273,818 - CA265_RS01075 0.19 -0.7 273,822 + CA265_RS01075 0.19 -0.0
Or see this region's nucleotide sequence