Experiment: L-Threonine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS25645 and ABID97_RS25650 are separated by 20 nucleotides ABID97_RS25650 and ABID97_RS25655 are separated by 41 nucleotides ABID97_RS25655 and ABID97_RS25660 are separated by 47 nucleotides ABID97_RS25660 and ABID97_RS25665 overlap by 4 nucleotides
ABID97_RS25645: ABID97_RS25645 - L-arabinonate dehydratase, at 47,816 to 49,543
_RS25645
ABID97_RS25650: ABID97_RS25650 - ribonuclease activity regulator RraA, at 49,564 to 50,274
_RS25650
ABID97_RS25655: ABID97_RS25655 - tripartite tricarboxylate transporter substrate binding protein, at 50,316 to 51,311
_RS25655
ABID97_RS25660: ABID97_RS25660 - nucleotidyl transferase AbiEii/AbiGii toxin family protein, at 51,359 to 52,276
_RS25660
ABID97_RS25665: ABID97_RS25665 - type IV toxin-antitoxin system AbiEi family antitoxin domain-containing protein, at 52,273 to 53,016
_RS25665
Position (kb) 50
51
52 Strain fitness (log2 ratio) -1
0
1 at 49.720 kb on + strand, within ABID97_RS25650 at 49.966 kb on + strand, within ABID97_RS25650 at 49.967 kb on - strand, within ABID97_RS25650 at 50.433 kb on + strand, within ABID97_RS25655 at 50.434 kb on - strand, within ABID97_RS25655 at 50.434 kb on - strand, within ABID97_RS25655 at 50.434 kb on - strand, within ABID97_RS25655 at 50.569 kb on - strand, within ABID97_RS25655 at 50.595 kb on + strand, within ABID97_RS25655 at 50.596 kb on - strand, within ABID97_RS25655 at 50.596 kb on - strand, within ABID97_RS25655 at 50.646 kb on + strand, within ABID97_RS25655 at 50.662 kb on - strand, within ABID97_RS25655 at 50.886 kb on + strand, within ABID97_RS25655 at 51.346 kb on - strand at 51.766 kb on - strand, within ABID97_RS25660 at 51.835 kb on - strand, within ABID97_RS25660
Per-strain Table
Position Strand Gene LocusTag Fraction L-Threonine (C) remove 49,720 + ABID97_RS25650 0.22 -0.0 49,966 + ABID97_RS25650 0.57 -0.0 49,967 - ABID97_RS25650 0.57 -0.2 50,433 + ABID97_RS25655 0.12 -0.2 50,434 - ABID97_RS25655 0.12 +0.0 50,434 - ABID97_RS25655 0.12 +0.2 50,434 - ABID97_RS25655 0.12 +0.4 50,569 - ABID97_RS25655 0.25 +0.2 50,595 + ABID97_RS25655 0.28 +0.6 50,596 - ABID97_RS25655 0.28 -0.2 50,596 - ABID97_RS25655 0.28 -0.2 50,646 + ABID97_RS25655 0.33 +0.1 50,662 - ABID97_RS25655 0.35 +0.2 50,886 + ABID97_RS25655 0.57 +0.0 51,346 - +1.1 51,766 - ABID97_RS25660 0.44 -1.7 51,835 - ABID97_RS25660 0.52 -0.6
Or see this region's nucleotide sequence