Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3736

Experiment: KB with Nitrofurantoin 125 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3735 and Psyr_3736 are separated by 625 nucleotidesPsyr_3736 and Psyr_3737 are separated by 95 nucleotidesPsyr_3737 and Psyr_3738 are separated by 93 nucleotides Psyr_3735: Psyr_3735 - PAS, at 4,446,990 to 4,448,555 _3735 Psyr_3736: Psyr_3736 - Peptidoglycan-binding LysM, at 4,449,181 to 4,451,394 _3736 Psyr_3737: Psyr_3737 - transcriptional regulator, MarR family, at 4,451,490 to 4,451,924 _3737 Psyr_3738: Psyr_3738 - ATP-dependent DNA helicase RecQ, at 4,452,018 to 4,454,147 _3738 Position (kb) 4449 4450 4451 4452Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 4448.259 kb on + strand, within Psyr_3735at 4448.259 kb on + strand, within Psyr_3735at 4448.263 kb on + strand, within Psyr_3735at 4448.263 kb on + strand, within Psyr_3735at 4448.263 kb on + strand, within Psyr_3735at 4448.263 kb on + strand, within Psyr_3735at 4448.264 kb on - strand, within Psyr_3735at 4448.264 kb on - strand, within Psyr_3735at 4448.279 kb on - strand, within Psyr_3735at 4448.281 kb on + strand, within Psyr_3735at 4448.282 kb on - strand, within Psyr_3735at 4448.351 kb on + strand, within Psyr_3735at 4448.351 kb on + strand, within Psyr_3735at 4448.351 kb on + strand, within Psyr_3735at 4448.351 kb on + strand, within Psyr_3735at 4448.351 kb on + strand, within Psyr_3735at 4448.352 kb on - strand, within Psyr_3735at 4448.352 kb on - strand, within Psyr_3735at 4448.352 kb on - strand, within Psyr_3735at 4448.352 kb on - strand, within Psyr_3735at 4448.461 kb on + strandat 4448.461 kb on + strandat 4448.461 kb on + strandat 4448.461 kb on + strandat 4448.462 kb on - strandat 4448.557 kb on - strandat 4448.557 kb on - strandat 4448.607 kb on - strandat 4448.607 kb on - strandat 4448.607 kb on - strandat 4448.702 kb on + strandat 4448.703 kb on - strandat 4448.731 kb on + strandat 4448.731 kb on + strandat 4448.854 kb on - strandat 4449.422 kb on - strand, within Psyr_3736at 4450.034 kb on + strand, within Psyr_3736at 4450.043 kb on + strand, within Psyr_3736at 4450.043 kb on + strand, within Psyr_3736at 4450.043 kb on + strand, within Psyr_3736at 4450.043 kb on + strand, within Psyr_3736at 4450.043 kb on + strand, within Psyr_3736at 4450.043 kb on + strand, within Psyr_3736at 4450.044 kb on - strand, within Psyr_3736at 4450.044 kb on - strand, within Psyr_3736at 4450.044 kb on - strand, within Psyr_3736at 4450.044 kb on - strand, within Psyr_3736at 4450.044 kb on - strand, within Psyr_3736at 4450.291 kb on + strand, within Psyr_3736at 4450.292 kb on - strand, within Psyr_3736at 4450.292 kb on - strand, within Psyr_3736at 4450.842 kb on + strand, within Psyr_3736at 4450.842 kb on + strand, within Psyr_3736at 4450.843 kb on - strand, within Psyr_3736at 4450.843 kb on - strand, within Psyr_3736at 4450.843 kb on - strand, within Psyr_3736at 4450.843 kb on - strand, within Psyr_3736at 4450.843 kb on - strand, within Psyr_3736at 4450.843 kb on - strand, within Psyr_3736at 4450.843 kb on - strand, within Psyr_3736at 4450.843 kb on - strand, within Psyr_3736at 4450.845 kb on - strand, within Psyr_3736at 4450.845 kb on - strand, within Psyr_3736at 4450.845 kb on - strand, within Psyr_3736at 4450.982 kb on + strand, within Psyr_3736at 4450.982 kb on + strand, within Psyr_3736at 4450.982 kb on + strand, within Psyr_3736at 4450.982 kb on + strand, within Psyr_3736at 4450.983 kb on - strand, within Psyr_3736at 4450.983 kb on - strand, within Psyr_3736at 4451.037 kb on - strand, within Psyr_3736at 4451.381 kb on - strandat 4451.431 kb on + strandat 4451.432 kb on - strandat 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.586 kb on + strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.587 kb on - strand, within Psyr_3737at 4451.739 kb on + strand, within Psyr_3737at 4451.740 kb on - strand, within Psyr_3737at 4451.740 kb on - strand, within Psyr_3737at 4451.783 kb on + strand, within Psyr_3737at 4451.950 kb on + strandat 4451.950 kb on + strandat 4451.961 kb on + strandat 4451.974 kb on + strandat 4451.974 kb on + strandat 4451.974 kb on + strandat 4451.974 kb on + strandat 4451.974 kb on + strandat 4451.975 kb on - strandat 4451.975 kb on - strandat 4451.975 kb on - strandat 4451.975 kb on - strandat 4451.975 kb on - strandat 4452.020 kb on - strandat 4452.021 kb on + strandat 4452.021 kb on + strandat 4452.022 kb on - strandat 4452.022 kb on - strandat 4452.058 kb on + strandat 4452.058 kb on + strandat 4452.059 kb on - strandat 4452.059 kb on - strandat 4452.059 kb on - strandat 4452.235 kb on + strand, within Psyr_3738at 4452.236 kb on - strand, within Psyr_3738at 4452.236 kb on - strand, within Psyr_3738

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nitrofurantoin 125 ug/ml
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4,448,259 + Psyr_3735 0.81 +0.3
4,448,259 + Psyr_3735 0.81 +0.2
4,448,263 + Psyr_3735 0.81 -0.7
4,448,263 + Psyr_3735 0.81 +0.7
4,448,263 + Psyr_3735 0.81 +0.1
4,448,263 + Psyr_3735 0.81 -1.9
4,448,264 - Psyr_3735 0.81 -0.6
4,448,264 - Psyr_3735 0.81 +1.2
4,448,279 - Psyr_3735 0.82 +0.6
4,448,281 + Psyr_3735 0.82 -1.9
4,448,282 - Psyr_3735 0.83 +1.8
4,448,351 + Psyr_3735 0.87 +0.3
4,448,351 + Psyr_3735 0.87 +0.4
4,448,351 + Psyr_3735 0.87 -0.7
4,448,351 + Psyr_3735 0.87 -1.2
4,448,351 + Psyr_3735 0.87 -1.2
4,448,352 - Psyr_3735 0.87 +1.4
4,448,352 - Psyr_3735 0.87 -0.4
4,448,352 - Psyr_3735 0.87 +1.1
4,448,352 - Psyr_3735 0.87 +0.1
4,448,461 + +3.3
4,448,461 + -0.1
4,448,461 + -1.0
4,448,461 + +0.3
4,448,462 - -0.3
4,448,557 - -1.6
4,448,557 - -0.0
4,448,607 - -0.9
4,448,607 - -2.0
4,448,607 - +0.6
4,448,702 + +0.5
4,448,703 - -0.4
4,448,731 + -0.7
4,448,731 + -0.7
4,448,854 - -3.0
4,449,422 - Psyr_3736 0.11 -1.6
4,450,034 + Psyr_3736 0.39 +0.1
4,450,043 + Psyr_3736 0.39 -1.4
4,450,043 + Psyr_3736 0.39 -0.2
4,450,043 + Psyr_3736 0.39 -0.5
4,450,043 + Psyr_3736 0.39 -0.4
4,450,043 + Psyr_3736 0.39 +0.3
4,450,043 + Psyr_3736 0.39 +0.6
4,450,044 - Psyr_3736 0.39 +0.7
4,450,044 - Psyr_3736 0.39 +0.3
4,450,044 - Psyr_3736 0.39 +2.7
4,450,044 - Psyr_3736 0.39 -1.0
4,450,044 - Psyr_3736 0.39 -1.1
4,450,291 + Psyr_3736 0.50 -1.1
4,450,292 - Psyr_3736 0.50 +1.0
4,450,292 - Psyr_3736 0.50 +1.2
4,450,842 + Psyr_3736 0.75 -2.3
4,450,842 + Psyr_3736 0.75 -0.6
4,450,843 - Psyr_3736 0.75 +1.5
4,450,843 - Psyr_3736 0.75 -1.1
4,450,843 - Psyr_3736 0.75 -0.6
4,450,843 - Psyr_3736 0.75 +0.1
4,450,843 - Psyr_3736 0.75 -0.0
4,450,843 - Psyr_3736 0.75 -1.0
4,450,843 - Psyr_3736 0.75 -1.3
4,450,843 - Psyr_3736 0.75 -1.2
4,450,845 - Psyr_3736 0.75 -0.2
4,450,845 - Psyr_3736 0.75 +0.1
4,450,845 - Psyr_3736 0.75 +0.7
4,450,982 + Psyr_3736 0.81 -0.6
4,450,982 + Psyr_3736 0.81 -0.0
4,450,982 + Psyr_3736 0.81 +0.1
4,450,982 + Psyr_3736 0.81 -0.3
4,450,983 - Psyr_3736 0.81 +0.7
4,450,983 - Psyr_3736 0.81 -0.4
4,451,037 - Psyr_3736 0.84 +1.0
4,451,381 - +0.1
4,451,431 + -0.9
4,451,432 - -0.3
4,451,586 + Psyr_3737 0.22 +1.0
4,451,586 + Psyr_3737 0.22 +0.5
4,451,586 + Psyr_3737 0.22 +0.6
4,451,586 + Psyr_3737 0.22 +0.6
4,451,586 + Psyr_3737 0.22 -0.5
4,451,586 + Psyr_3737 0.22 +1.4
4,451,586 + Psyr_3737 0.22 +0.1
4,451,586 + Psyr_3737 0.22 +0.9
4,451,587 - Psyr_3737 0.22 +0.4
4,451,587 - Psyr_3737 0.22 +0.8
4,451,587 - Psyr_3737 0.22 -0.1
4,451,587 - Psyr_3737 0.22 +1.8
4,451,587 - Psyr_3737 0.22 -0.1
4,451,587 - Psyr_3737 0.22 +0.2
4,451,587 - Psyr_3737 0.22 -1.6
4,451,739 + Psyr_3737 0.57 -0.6
4,451,740 - Psyr_3737 0.57 -2.1
4,451,740 - Psyr_3737 0.57 -0.4
4,451,783 + Psyr_3737 0.67 -0.8
4,451,950 + +0.1
4,451,950 + -0.9
4,451,961 + -2.6
4,451,974 + +0.0
4,451,974 + +0.7
4,451,974 + +0.7
4,451,974 + +0.6
4,451,974 + -0.0
4,451,975 - +0.6
4,451,975 - +1.7
4,451,975 - -0.9
4,451,975 - -0.3
4,451,975 - +0.3
4,452,020 - -0.4
4,452,021 + +0.5
4,452,021 + +0.3
4,452,022 - -1.5
4,452,022 - -0.8
4,452,058 + +1.2
4,452,058 + -0.0
4,452,059 - +0.1
4,452,059 - -0.6
4,452,059 - -0.8
4,452,235 + Psyr_3738 0.10 -1.0
4,452,236 - Psyr_3738 0.10 -1.1
4,452,236 - Psyr_3738 0.10 -1.4

Or see this region's nucleotide sequence