Strain Fitness in Pseudomonas sp. S08-1 around OH686_06860

Experiment: Trisodium citrate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_06850 and OH686_06855 are separated by 21 nucleotidesOH686_06855 and OH686_06860 are separated by 344 nucleotidesOH686_06860 and OH686_06865 are separated by 59 nucleotides OH686_06850: OH686_06850 - peptide chain release factor 2, at 1,395,649 to 1,396,563 _06850 OH686_06855: OH686_06855 - CDS, at 1,396,585 to 1,396,716 _06855 OH686_06860: OH686_06860 - hypothetical protein, at 1,397,061 to 1,397,966 _06860 OH686_06865: OH686_06865 - hypothetical protein, at 1,398,026 to 1,399,381 _06865 Position (kb) 1397 1398Strain fitness (log2 ratio) -2 -1 0 1at 1396.868 kb on + strandat 1396.868 kb on + strandat 1396.868 kb on + strandat 1396.868 kb on + strandat 1396.868 kb on + strandat 1396.868 kb on + strandat 1396.869 kb on - strandat 1396.870 kb on + strandat 1396.933 kb on + strandat 1396.933 kb on + strandat 1396.933 kb on + strandat 1396.934 kb on - strandat 1396.942 kb on - strandat 1396.942 kb on - strandat 1396.942 kb on - strandat 1396.982 kb on + strandat 1396.982 kb on + strandat 1396.982 kb on + strandat 1396.982 kb on + strandat 1396.983 kb on - strandat 1396.991 kb on + strandat 1396.992 kb on - strandat 1397.116 kb on + strandat 1397.116 kb on + strandat 1397.117 kb on - strandat 1397.117 kb on - strandat 1397.117 kb on - strandat 1397.117 kb on - strandat 1397.128 kb on + strandat 1397.128 kb on + strandat 1397.128 kb on + strandat 1397.129 kb on - strandat 1397.129 kb on - strandat 1397.129 kb on - strandat 1397.129 kb on - strandat 1397.143 kb on + strandat 1397.143 kb on + strandat 1397.143 kb on + strandat 1397.143 kb on + strandat 1397.143 kb on + strandat 1397.143 kb on + strandat 1397.143 kb on + strandat 1397.144 kb on - strandat 1397.144 kb on - strandat 1397.144 kb on - strandat 1397.144 kb on - strandat 1397.329 kb on + strand, within OH686_06860at 1397.329 kb on + strand, within OH686_06860at 1397.329 kb on + strand, within OH686_06860at 1397.329 kb on + strand, within OH686_06860at 1397.329 kb on + strand, within OH686_06860at 1397.329 kb on + strand, within OH686_06860at 1397.329 kb on + strand, within OH686_06860at 1397.329 kb on + strand, within OH686_06860at 1397.329 kb on + strand, within OH686_06860at 1397.329 kb on + strand, within OH686_06860at 1397.330 kb on - strand, within OH686_06860at 1397.330 kb on - strand, within OH686_06860at 1397.330 kb on - strand, within OH686_06860at 1397.330 kb on - strand, within OH686_06860at 1397.330 kb on - strand, within OH686_06860at 1397.330 kb on - strand, within OH686_06860at 1397.330 kb on - strand, within OH686_06860at 1397.330 kb on - strand, within OH686_06860at 1397.365 kb on + strand, within OH686_06860at 1397.365 kb on + strand, within OH686_06860at 1397.365 kb on + strand, within OH686_06860at 1397.437 kb on + strand, within OH686_06860at 1397.437 kb on + strand, within OH686_06860at 1397.437 kb on + strand, within OH686_06860at 1397.437 kb on + strand, within OH686_06860at 1397.437 kb on + strand, within OH686_06860at 1397.437 kb on + strand, within OH686_06860at 1397.437 kb on + strand, within OH686_06860at 1397.438 kb on - strand, within OH686_06860at 1397.438 kb on - strand, within OH686_06860at 1397.438 kb on - strand, within OH686_06860at 1397.587 kb on + strand, within OH686_06860at 1397.587 kb on + strand, within OH686_06860at 1397.587 kb on + strand, within OH686_06860at 1397.587 kb on + strand, within OH686_06860at 1397.587 kb on + strand, within OH686_06860at 1397.587 kb on + strand, within OH686_06860at 1397.588 kb on - strand, within OH686_06860at 1397.588 kb on - strand, within OH686_06860at 1397.588 kb on - strand, within OH686_06860at 1397.591 kb on + strand, within OH686_06860at 1397.591 kb on + strand, within OH686_06860at 1397.591 kb on + strand, within OH686_06860at 1397.591 kb on + strand, within OH686_06860at 1397.591 kb on + strand, within OH686_06860at 1397.591 kb on + strand, within OH686_06860at 1397.592 kb on - strand, within OH686_06860at 1397.592 kb on - strand, within OH686_06860at 1397.605 kb on + strand, within OH686_06860at 1397.605 kb on + strand, within OH686_06860at 1397.605 kb on + strand, within OH686_06860at 1397.606 kb on - strand, within OH686_06860at 1397.606 kb on - strand, within OH686_06860at 1397.606 kb on - strand, within OH686_06860at 1397.782 kb on + strand, within OH686_06860at 1397.782 kb on + strand, within OH686_06860at 1397.782 kb on + strand, within OH686_06860at 1397.783 kb on - strand, within OH686_06860at 1397.783 kb on - strand, within OH686_06860at 1397.783 kb on - strand, within OH686_06860at 1397.783 kb on - strand, within OH686_06860at 1397.783 kb on - strand, within OH686_06860at 1397.845 kb on - strand, within OH686_06860at 1397.994 kb on - strandat 1398.024 kb on + strandat 1398.024 kb on + strandat 1398.024 kb on + strandat 1398.025 kb on - strandat 1398.025 kb on - strandat 1398.025 kb on - strandat 1398.025 kb on - strandat 1398.097 kb on - strandat 1398.144 kb on + strandat 1398.144 kb on + strandat 1398.144 kb on + strandat 1398.144 kb on + strandat 1398.144 kb on + strandat 1398.145 kb on - strandat 1398.145 kb on - strandat 1398.145 kb on - strandat 1398.214 kb on + strand, within OH686_06865at 1398.214 kb on + strand, within OH686_06865at 1398.214 kb on + strand, within OH686_06865at 1398.215 kb on - strand, within OH686_06865at 1398.822 kb on + strand, within OH686_06865at 1398.823 kb on - strand, within OH686_06865at 1398.823 kb on - strand, within OH686_06865

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Per-strain Table

Position Strand Gene LocusTag Fraction Trisodium citrate (C)
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1,396,868 + -0.5
1,396,868 + -1.5
1,396,868 + -0.3
1,396,868 + -1.1
1,396,868 + +0.3
1,396,868 + +0.9
1,396,869 - +0.3
1,396,870 + +0.0
1,396,933 + -1.2
1,396,933 + -0.5
1,396,933 + +0.3
1,396,934 - -1.8
1,396,942 - -0.9
1,396,942 - -0.3
1,396,942 - +0.1
1,396,982 + +0.5
1,396,982 + -1.2
1,396,982 + +0.1
1,396,982 + +0.3
1,396,983 - -0.3
1,396,991 + +0.2
1,396,992 - -0.1
1,397,116 + +0.4
1,397,116 + +0.9
1,397,117 - -0.6
1,397,117 - -0.1
1,397,117 - +0.6
1,397,117 - -0.1
1,397,128 + -0.5
1,397,128 + -0.4
1,397,128 + +0.8
1,397,129 - +0.5
1,397,129 - +0.4
1,397,129 - +0.4
1,397,129 - -0.1
1,397,143 + -0.8
1,397,143 + -0.4
1,397,143 + -0.1
1,397,143 + +0.7
1,397,143 + +0.4
1,397,143 + -1.4
1,397,143 + -0.6
1,397,144 - -0.9
1,397,144 - +0.6
1,397,144 - -0.3
1,397,144 - -0.0
1,397,329 + OH686_06860 0.30 +0.1
1,397,329 + OH686_06860 0.30 -0.9
1,397,329 + OH686_06860 0.30 -0.5
1,397,329 + OH686_06860 0.30 -0.4
1,397,329 + OH686_06860 0.30 -0.6
1,397,329 + OH686_06860 0.30 +0.5
1,397,329 + OH686_06860 0.30 +0.1
1,397,329 + OH686_06860 0.30 -0.1
1,397,329 + OH686_06860 0.30 +0.3
1,397,329 + OH686_06860 0.30 -0.8
1,397,330 - OH686_06860 0.30 +0.4
1,397,330 - OH686_06860 0.30 -0.8
1,397,330 - OH686_06860 0.30 +0.4
1,397,330 - OH686_06860 0.30 +0.2
1,397,330 - OH686_06860 0.30 -0.4
1,397,330 - OH686_06860 0.30 +0.7
1,397,330 - OH686_06860 0.30 -0.5
1,397,330 - OH686_06860 0.30 -0.3
1,397,365 + OH686_06860 0.34 +0.7
1,397,365 + OH686_06860 0.34 -1.7
1,397,365 + OH686_06860 0.34 +0.0
1,397,437 + OH686_06860 0.42 -0.2
1,397,437 + OH686_06860 0.42 -0.9
1,397,437 + OH686_06860 0.42 -1.3
1,397,437 + OH686_06860 0.42 -0.3
1,397,437 + OH686_06860 0.42 -0.5
1,397,437 + OH686_06860 0.42 +0.0
1,397,437 + OH686_06860 0.42 +0.3
1,397,438 - OH686_06860 0.42 -0.4
1,397,438 - OH686_06860 0.42 +0.5
1,397,438 - OH686_06860 0.42 -1.3
1,397,587 + OH686_06860 0.58 -0.0
1,397,587 + OH686_06860 0.58 -0.9
1,397,587 + OH686_06860 0.58 +0.2
1,397,587 + OH686_06860 0.58 +0.0
1,397,587 + OH686_06860 0.58 -0.5
1,397,587 + OH686_06860 0.58 +0.0
1,397,588 - OH686_06860 0.58 +0.2
1,397,588 - OH686_06860 0.58 -0.2
1,397,588 - OH686_06860 0.58 -0.0
1,397,591 + OH686_06860 0.58 +0.5
1,397,591 + OH686_06860 0.58 -0.7
1,397,591 + OH686_06860 0.58 -0.4
1,397,591 + OH686_06860 0.58 +0.3
1,397,591 + OH686_06860 0.58 -0.5
1,397,591 + OH686_06860 0.58 -0.3
1,397,592 - OH686_06860 0.59 -0.2
1,397,592 - OH686_06860 0.59 +0.7
1,397,605 + OH686_06860 0.60 +0.0
1,397,605 + OH686_06860 0.60 -0.7
1,397,605 + OH686_06860 0.60 +0.4
1,397,606 - OH686_06860 0.60 +0.2
1,397,606 - OH686_06860 0.60 -0.3
1,397,606 - OH686_06860 0.60 -0.7
1,397,782 + OH686_06860 0.80 +0.3
1,397,782 + OH686_06860 0.80 +0.1
1,397,782 + OH686_06860 0.80 -0.5
1,397,783 - OH686_06860 0.80 +0.0
1,397,783 - OH686_06860 0.80 -0.1
1,397,783 - OH686_06860 0.80 -0.5
1,397,783 - OH686_06860 0.80 +0.1
1,397,783 - OH686_06860 0.80 -0.2
1,397,845 - OH686_06860 0.87 +0.2
1,397,994 - -0.3
1,398,024 + -0.2
1,398,024 + +0.2
1,398,024 + +0.4
1,398,025 - +0.2
1,398,025 - +0.3
1,398,025 - -0.8
1,398,025 - -0.1
1,398,097 - -0.1
1,398,144 + +0.6
1,398,144 + -0.1
1,398,144 + +0.5
1,398,144 + -0.3
1,398,144 + +0.7
1,398,145 - +0.3
1,398,145 - +0.3
1,398,145 - -0.2
1,398,214 + OH686_06865 0.14 -0.1
1,398,214 + OH686_06865 0.14 -0.1
1,398,214 + OH686_06865 0.14 +0.6
1,398,215 - OH686_06865 0.14 -0.0
1,398,822 + OH686_06865 0.59 -0.4
1,398,823 - OH686_06865 0.59 -0.6
1,398,823 - OH686_06865 0.59 -0.2

Or see this region's nucleotide sequence