Strain Fitness in Variovorax sp. OAS795 around ABID97_RS14520

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS14515 and ABID97_RS14520 are separated by 319 nucleotidesABID97_RS14520 and ABID97_RS14525 are separated by 506 nucleotides ABID97_RS14515: ABID97_RS14515 - DUF2513 domain-containing protein, at 3,019,422 to 3,019,796 _RS14515 ABID97_RS14520: ABID97_RS14520 - hypothetical protein, at 3,020,116 to 3,020,406 _RS14520 ABID97_RS14525: ABID97_RS14525 - hypothetical protein, at 3,020,913 to 3,021,365 _RS14525 Position (kb) 3020 3021Strain fitness (log2 ratio) -2 -1 0 1 2at 3019.354 kb on + strandat 3019.355 kb on - strandat 3019.503 kb on + strand, within ABID97_RS14515at 3019.520 kb on + strand, within ABID97_RS14515at 3019.520 kb on + strand, within ABID97_RS14515at 3019.521 kb on - strand, within ABID97_RS14515at 3019.521 kb on - strand, within ABID97_RS14515at 3019.957 kb on - strandat 3019.957 kb on - strandat 3020.020 kb on - strandat 3020.404 kb on + strandat 3020.684 kb on + strandat 3020.685 kb on - strandat 3020.687 kb on + strandat 3020.713 kb on - strandat 3020.713 kb on - strandat 3020.776 kb on + strandat 3020.776 kb on + strandat 3020.776 kb on + strandat 3020.776 kb on + strandat 3020.776 kb on + strandat 3020.776 kb on + strandat 3020.776 kb on + strandat 3020.777 kb on - strandat 3020.777 kb on - strandat 3020.777 kb on - strandat 3020.777 kb on - strandat 3020.777 kb on - strandat 3020.777 kb on - strandat 3020.808 kb on + strandat 3020.809 kb on - strandat 3020.812 kb on + strandat 3020.812 kb on + strandat 3020.813 kb on - strandat 3020.813 kb on - strandat 3020.813 kb on - strandat 3020.878 kb on + strandat 3020.932 kb on - strandat 3020.946 kb on + strandat 3020.947 kb on - strandat 3020.947 kb on - strandat 3020.947 kb on - strandat 3020.980 kb on + strand, within ABID97_RS14525at 3020.980 kb on + strand, within ABID97_RS14525at 3020.981 kb on - strand, within ABID97_RS14525at 3021.019 kb on + strand, within ABID97_RS14525at 3021.274 kb on + strand, within ABID97_RS14525at 3021.299 kb on - strand, within ABID97_RS14525at 3021.343 kb on + strandat 3021.344 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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3,019,354 + -0.0
3,019,355 - +0.9
3,019,503 + ABID97_RS14515 0.22 -1.0
3,019,520 + ABID97_RS14515 0.26 +0.3
3,019,520 + ABID97_RS14515 0.26 -0.5
3,019,521 - ABID97_RS14515 0.26 -0.8
3,019,521 - ABID97_RS14515 0.26 -0.2
3,019,957 - -0.1
3,019,957 - -0.1
3,020,020 - +2.1
3,020,404 + +0.4
3,020,684 + -0.8
3,020,685 - -0.2
3,020,687 + -0.2
3,020,713 - -0.4
3,020,713 - -0.2
3,020,776 + +1.3
3,020,776 + -0.0
3,020,776 + +0.2
3,020,776 + +0.8
3,020,776 + -1.1
3,020,776 + -0.1
3,020,776 + +0.1
3,020,777 - -0.3
3,020,777 - -1.2
3,020,777 - -0.7
3,020,777 - -0.2
3,020,777 - -0.7
3,020,777 - -1.0
3,020,808 + -0.5
3,020,809 - -0.2
3,020,812 + -1.8
3,020,812 + +0.4
3,020,813 - +0.1
3,020,813 - +1.2
3,020,813 - +1.0
3,020,878 + +0.4
3,020,932 - +0.2
3,020,946 + +0.3
3,020,947 - +0.1
3,020,947 - +0.3
3,020,947 - -2.4
3,020,980 + ABID97_RS14525 0.15 +0.1
3,020,980 + ABID97_RS14525 0.15 -0.3
3,020,981 - ABID97_RS14525 0.15 -0.1
3,021,019 + ABID97_RS14525 0.23 -0.3
3,021,274 + ABID97_RS14525 0.80 +0.0
3,021,299 - ABID97_RS14525 0.85 -0.3
3,021,343 + -0.1
3,021,344 - -0.2

Or see this region's nucleotide sequence