Strain Fitness in Variovorax sp. OAS795 around ABID97_RS12975

Experiment: L-Glutamic (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS12970 and ABID97_RS12975 overlap by 4 nucleotidesABID97_RS12975 and ABID97_RS12980 are separated by 10 nucleotidesABID97_RS12980 and ABID97_RS12985 are separated by 14 nucleotides ABID97_RS12970: ABID97_RS12970 - pentapeptide repeat-containing protein, at 2,694,018 to 2,696,165 _RS12970 ABID97_RS12975: ABID97_RS12975 - pentapeptide repeat-containing protein, at 2,696,162 to 2,697,259 _RS12975 ABID97_RS12980: ABID97_RS12980 - DUF3540 domain-containing protein, at 2,697,270 to 2,697,983 _RS12980 ABID97_RS12985: ABID97_RS12985 - DUF4150 domain-containing protein, at 2,697,998 to 2,698,390 _RS12985 Position (kb) 2696 2697 2698Strain fitness (log2 ratio) -1 0 1at 2696.070 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Glutamic (C)
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2,696,070 + -0.2

Or see this region's nucleotide sequence