Experiment: Uridine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02692 and SMc02693 are separated by 361 nucleotides SMc02693 and SMc02694 are separated by 55 nucleotides SMc02694 and SMc02695 are separated by 230 nucleotides
SMc02692: SMc02692 - 50S ribosomal protein L25, at 2,542,289 to 2,542,903
SMc02692
SMc02693: SMc02693 - peptidyl-tRNA hydrolase, at 2,543,265 to 2,543,984
SMc02693
SMc02694: SMc02694 - ATP-dependent Clp protease adaptor, at 2,544,040 to 2,544,345
SMc02694
SMc02695: SMc02695 - GTP-dependent nucleic acid-binding protein EngD, at 2,544,576 to 2,545,679
SMc02695
Position (kb)
2543
2544 Strain fitness (log2 ratio)
-1
0
1 at 2543.886 kb on - strand, within SMc02693 at 2543.888 kb on - strand, within SMc02693 at 2543.939 kb on + strand at 2543.982 kb on + strand at 2544.281 kb on + strand, within SMc02694 at 2544.282 kb on - strand, within SMc02694 at 2544.328 kb on + strand at 2544.349 kb on + strand at 2544.349 kb on + strand at 2544.538 kb on - strand at 2544.538 kb on - strand at 2544.673 kb on - strand at 2544.791 kb on - strand, within SMc02695
Per-strain Table
Position Strand Gene LocusTag Fraction Uridine (C) remove 2,543,886 - SMc02693 0.86 +0.8 2,543,888 - SMc02693 0.87 +0.4 2,543,939 + -0.1 2,543,982 + -0.4 2,544,281 + SMc02694 0.79 +0.9 2,544,282 - SMc02694 0.79 -0.0 2,544,328 + +0.2 2,544,349 + -0.2 2,544,349 + -1.7 2,544,538 - -0.1 2,544,538 - -0.1 2,544,673 - -1.2 2,544,791 - SMc02695 0.19 -1.1
Or see this region's nucleotide sequence