Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_759

Experiment: D-Glucosamine Hydrochloride (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_758 and PfGW456L13_759 are separated by 222 nucleotidesPfGW456L13_759 and PfGW456L13_760 are separated by 67 nucleotides PfGW456L13_758 - Phosphate regulon transcriptional regulatory protein PhoB (SphR), at 863,673 to 864,575 _758 PfGW456L13_759 - Peptidase, M23/M37 family, at 864,798 to 865,694 _759 PfGW456L13_760 - Phosphate regulon metal ion transporter containing CBS domains, at 865,762 to 867,084 _760 Position (kb) 864 865 866Strain fitness (log2 ratio) -2 -1 0 1 2at 864.076 kb on + strand, within PfGW456L13_758at 864.077 kb on - strand, within PfGW456L13_758at 864.149 kb on - strand, within PfGW456L13_758at 864.149 kb on - strand, within PfGW456L13_758at 864.516 kb on + strandat 864.516 kb on + strandat 864.516 kb on + strandat 864.516 kb on + strandat 864.516 kb on + strandat 864.516 kb on + strandat 864.516 kb on + strandat 864.516 kb on + strandat 864.516 kb on + strandat 864.516 kb on + strandat 864.516 kb on + strandat 864.516 kb on + strandat 864.516 kb on + strandat 864.516 kb on + strandat 864.517 kb on - strandat 864.517 kb on - strandat 864.517 kb on - strandat 864.517 kb on - strandat 864.517 kb on - strandat 864.517 kb on - strandat 864.517 kb on - strandat 864.517 kb on - strandat 864.517 kb on - strandat 864.560 kb on + strandat 864.560 kb on + strandat 864.560 kb on + strandat 864.560 kb on + strandat 864.576 kb on + strandat 864.577 kb on - strandat 864.577 kb on - strandat 864.577 kb on - strandat 864.578 kb on + strandat 864.578 kb on + strandat 864.578 kb on + strandat 864.578 kb on + strandat 864.579 kb on - strandat 864.579 kb on - strandat 864.579 kb on - strandat 864.579 kb on - strandat 864.579 kb on - strandat 864.628 kb on + strandat 864.629 kb on - strandat 864.629 kb on - strandat 864.629 kb on - strandat 864.629 kb on - strandat 864.693 kb on + strandat 864.694 kb on - strandat 864.758 kb on + strandat 864.758 kb on + strandat 864.758 kb on + strandat 864.759 kb on - strandat 864.820 kb on + strandat 864.820 kb on + strandat 864.821 kb on - strandat 864.821 kb on - strandat 864.821 kb on - strandat 864.821 kb on - strandat 864.821 kb on - strandat 864.867 kb on + strandat 864.867 kb on + strandat 864.867 kb on + strandat 864.867 kb on + strandat 864.867 kb on + strandat 864.867 kb on + strandat 864.867 kb on + strandat 864.867 kb on + strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.868 kb on - strandat 864.885 kb on + strandat 864.885 kb on + strandat 864.886 kb on - strandat 864.886 kb on - strandat 864.886 kb on - strandat 864.886 kb on - strandat 865.017 kb on + strand, within PfGW456L13_759at 865.017 kb on + strand, within PfGW456L13_759at 865.017 kb on + strand, within PfGW456L13_759at 865.017 kb on + strand, within PfGW456L13_759at 865.017 kb on + strand, within PfGW456L13_759at 865.018 kb on - strand, within PfGW456L13_759at 865.018 kb on - strand, within PfGW456L13_759at 865.018 kb on - strand, within PfGW456L13_759at 865.018 kb on - strand, within PfGW456L13_759at 865.018 kb on - strand, within PfGW456L13_759at 865.035 kb on + strand, within PfGW456L13_759at 865.036 kb on - strand, within PfGW456L13_759at 865.036 kb on - strand, within PfGW456L13_759at 865.045 kb on + strand, within PfGW456L13_759at 865.160 kb on + strand, within PfGW456L13_759at 865.160 kb on + strand, within PfGW456L13_759at 865.161 kb on - strand, within PfGW456L13_759at 865.182 kb on + strand, within PfGW456L13_759at 865.182 kb on + strand, within PfGW456L13_759at 865.182 kb on + strand, within PfGW456L13_759at 865.182 kb on + strand, within PfGW456L13_759at 865.182 kb on + strand, within PfGW456L13_759at 865.182 kb on + strand, within PfGW456L13_759at 865.182 kb on + strand, within PfGW456L13_759at 865.182 kb on + strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.183 kb on - strand, within PfGW456L13_759at 865.200 kb on + strand, within PfGW456L13_759at 865.201 kb on - strand, within PfGW456L13_759at 865.201 kb on - strand, within PfGW456L13_759at 865.201 kb on - strand, within PfGW456L13_759at 865.300 kb on - strand, within PfGW456L13_759at 865.300 kb on - strand, within PfGW456L13_759at 865.334 kb on - strand, within PfGW456L13_759at 865.479 kb on + strand, within PfGW456L13_759at 865.479 kb on + strand, within PfGW456L13_759at 865.480 kb on - strand, within PfGW456L13_759at 865.480 kb on - strand, within PfGW456L13_759at 865.639 kb on - strandat 865.883 kb on + strandat 865.883 kb on + strandat 865.884 kb on - strandat 865.884 kb on - strandat 865.962 kb on + strand, within PfGW456L13_760at 866.303 kb on + strand, within PfGW456L13_760at 866.303 kb on + strand, within PfGW456L13_760at 866.303 kb on + strand, within PfGW456L13_760at 866.303 kb on + strand, within PfGW456L13_760at 866.304 kb on - strand, within PfGW456L13_760at 866.304 kb on - strand, within PfGW456L13_760at 866.522 kb on + strand, within PfGW456L13_760at 866.522 kb on + strand, within PfGW456L13_760at 866.523 kb on - strand, within PfGW456L13_760at 866.523 kb on - strand, within PfGW456L13_760at 866.523 kb on - strand, within PfGW456L13_760at 866.523 kb on - strand, within PfGW456L13_760at 866.574 kb on + strand, within PfGW456L13_760at 866.600 kb on + strand, within PfGW456L13_760at 866.600 kb on + strand, within PfGW456L13_760at 866.600 kb on + strand, within PfGW456L13_760at 866.600 kb on + strand, within PfGW456L13_760at 866.601 kb on - strand, within PfGW456L13_760at 866.601 kb on - strand, within PfGW456L13_760at 866.601 kb on - strand, within PfGW456L13_760at 866.601 kb on - strand, within PfGW456L13_760at 866.601 kb on - strand, within PfGW456L13_760at 866.601 kb on - strand, within PfGW456L13_760at 866.612 kb on + strand, within PfGW456L13_760at 866.612 kb on + strand, within PfGW456L13_760at 866.613 kb on - strand, within PfGW456L13_760at 866.613 kb on - strand, within PfGW456L13_760at 866.624 kb on + strand, within PfGW456L13_760at 866.624 kb on + strand, within PfGW456L13_760at 866.625 kb on - strand, within PfGW456L13_760at 866.625 kb on - strand, within PfGW456L13_760at 866.625 kb on - strand, within PfGW456L13_760at 866.633 kb on + strand, within PfGW456L13_760at 866.633 kb on + strand, within PfGW456L13_760at 866.634 kb on - strand, within PfGW456L13_760at 866.634 kb on - strand, within PfGW456L13_760at 866.634 kb on - strand, within PfGW456L13_760at 866.634 kb on - strand, within PfGW456L13_760at 866.634 kb on - strand, within PfGW456L13_760at 866.634 kb on - strand, within PfGW456L13_760

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucosamine Hydrochloride (C)
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864,076 + PfGW456L13_758 0.45 +2.3
864,077 - PfGW456L13_758 0.45 +0.6
864,149 - PfGW456L13_758 0.53 +0.5
864,149 - PfGW456L13_758 0.53 -0.9
864,516 + +0.1
864,516 + +1.5
864,516 + -0.9
864,516 + +0.8
864,516 + -0.7
864,516 + +1.0
864,516 + -0.3
864,516 + +0.7
864,516 + +0.3
864,516 + -1.5
864,516 + -2.5
864,516 + -0.0
864,516 + -0.1
864,516 + -1.6
864,517 - -1.2
864,517 - -1.0
864,517 - +1.8
864,517 - +0.7
864,517 - -0.2
864,517 - -0.3
864,517 - -0.6
864,517 - -1.1
864,517 - -0.5
864,560 + -0.7
864,560 + +2.1
864,560 + -0.4
864,560 + +0.8
864,576 + +1.0
864,577 - -0.5
864,577 - +0.3
864,577 - +1.1
864,578 + -0.2
864,578 + -0.5
864,578 + +0.1
864,578 + -0.8
864,579 - -1.2
864,579 - -1.1
864,579 - -0.4
864,579 - +0.1
864,579 - +0.9
864,628 + -0.7
864,629 - -0.7
864,629 - -0.6
864,629 - +0.1
864,629 - +0.6
864,693 + -0.9
864,694 - +0.4
864,758 + +0.9
864,758 + +0.2
864,758 + -2.0
864,759 - +0.1
864,820 + -0.2
864,820 + +1.0
864,821 - -0.0
864,821 - -1.7
864,821 - -0.8
864,821 - -0.2
864,821 - +1.1
864,867 + -0.5
864,867 + +0.8
864,867 + +0.3
864,867 + +0.7
864,867 + +0.6
864,867 + -0.9
864,867 + -1.0
864,867 + +0.1
864,868 - -0.6
864,868 - +0.7
864,868 - -0.8
864,868 - -1.4
864,868 - +1.3
864,868 - +1.9
864,868 - +0.6
864,868 - -0.7
864,868 - +1.7
864,868 - -0.7
864,885 + +0.9
864,885 + -2.0
864,886 - -0.3
864,886 - +0.0
864,886 - -0.2
864,886 - +0.4
865,017 + PfGW456L13_759 0.24 +1.2
865,017 + PfGW456L13_759 0.24 +1.1
865,017 + PfGW456L13_759 0.24 -1.2
865,017 + PfGW456L13_759 0.24 +0.3
865,017 + PfGW456L13_759 0.24 -0.3
865,018 - PfGW456L13_759 0.25 +0.3
865,018 - PfGW456L13_759 0.25 +0.2
865,018 - PfGW456L13_759 0.25 +0.5
865,018 - PfGW456L13_759 0.25 +0.0
865,018 - PfGW456L13_759 0.25 -0.1
865,035 + PfGW456L13_759 0.26 -1.3
865,036 - PfGW456L13_759 0.27 +0.2
865,036 - PfGW456L13_759 0.27 +0.1
865,045 + PfGW456L13_759 0.28 +0.4
865,160 + PfGW456L13_759 0.40 +0.5
865,160 + PfGW456L13_759 0.40 +0.7
865,161 - PfGW456L13_759 0.40 +0.4
865,182 + PfGW456L13_759 0.43 -1.0
865,182 + PfGW456L13_759 0.43 -0.8
865,182 + PfGW456L13_759 0.43 +0.3
865,182 + PfGW456L13_759 0.43 +1.4
865,182 + PfGW456L13_759 0.43 -0.3
865,182 + PfGW456L13_759 0.43 -0.8
865,182 + PfGW456L13_759 0.43 +0.8
865,182 + PfGW456L13_759 0.43 -0.9
865,183 - PfGW456L13_759 0.43 -0.3
865,183 - PfGW456L13_759 0.43 +0.6
865,183 - PfGW456L13_759 0.43 -0.3
865,183 - PfGW456L13_759 0.43 -0.4
865,183 - PfGW456L13_759 0.43 -0.4
865,183 - PfGW456L13_759 0.43 -0.2
865,183 - PfGW456L13_759 0.43 -0.2
865,183 - PfGW456L13_759 0.43 -0.5
865,183 - PfGW456L13_759 0.43 -1.0
865,200 + PfGW456L13_759 0.45 +0.1
865,201 - PfGW456L13_759 0.45 +0.8
865,201 - PfGW456L13_759 0.45 -0.4
865,201 - PfGW456L13_759 0.45 +0.6
865,300 - PfGW456L13_759 0.56 -1.3
865,300 - PfGW456L13_759 0.56 +0.3
865,334 - PfGW456L13_759 0.60 -0.0
865,479 + PfGW456L13_759 0.76 -1.5
865,479 + PfGW456L13_759 0.76 +0.2
865,480 - PfGW456L13_759 0.76 +0.5
865,480 - PfGW456L13_759 0.76 +0.2
865,639 - -0.5
865,883 + +1.1
865,883 + -0.2
865,884 - +0.4
865,884 - -0.6
865,962 + PfGW456L13_760 0.15 -0.9
866,303 + PfGW456L13_760 0.41 -1.6
866,303 + PfGW456L13_760 0.41 +0.1
866,303 + PfGW456L13_760 0.41 -1.0
866,303 + PfGW456L13_760 0.41 +1.1
866,304 - PfGW456L13_760 0.41 -1.3
866,304 - PfGW456L13_760 0.41 +0.7
866,522 + PfGW456L13_760 0.57 -1.9
866,522 + PfGW456L13_760 0.57 -0.5
866,523 - PfGW456L13_760 0.58 -1.7
866,523 - PfGW456L13_760 0.58 +0.9
866,523 - PfGW456L13_760 0.58 +0.9
866,523 - PfGW456L13_760 0.58 -1.2
866,574 + PfGW456L13_760 0.61 -0.3
866,600 + PfGW456L13_760 0.63 +0.9
866,600 + PfGW456L13_760 0.63 -0.4
866,600 + PfGW456L13_760 0.63 -0.1
866,600 + PfGW456L13_760 0.63 -1.3
866,601 - PfGW456L13_760 0.63 -0.5
866,601 - PfGW456L13_760 0.63 -0.1
866,601 - PfGW456L13_760 0.63 +0.7
866,601 - PfGW456L13_760 0.63 +0.2
866,601 - PfGW456L13_760 0.63 +0.8
866,601 - PfGW456L13_760 0.63 +0.0
866,612 + PfGW456L13_760 0.64 -0.8
866,612 + PfGW456L13_760 0.64 -0.9
866,613 - PfGW456L13_760 0.64 +1.0
866,613 - PfGW456L13_760 0.64 -0.1
866,624 + PfGW456L13_760 0.65 -0.2
866,624 + PfGW456L13_760 0.65 +0.7
866,625 - PfGW456L13_760 0.65 -1.6
866,625 - PfGW456L13_760 0.65 -1.0
866,625 - PfGW456L13_760 0.65 -1.0
866,633 + PfGW456L13_760 0.66 -1.6
866,633 + PfGW456L13_760 0.66 -1.1
866,634 - PfGW456L13_760 0.66 +1.3
866,634 - PfGW456L13_760 0.66 +0.3
866,634 - PfGW456L13_760 0.66 -1.6
866,634 - PfGW456L13_760 0.66 -0.2
866,634 - PfGW456L13_760 0.66 +0.5
866,634 - PfGW456L13_760 0.66 -0.2

Or see this region's nucleotide sequence