Strain Fitness in Variovorax sp. OAS795 around ABID97_RS29165

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS29160 and ABID97_RS29165 are separated by 334 nucleotidesABID97_RS29165 and ABID97_RS29170 are separated by 26 nucleotides ABID97_RS29160: ABID97_RS29160 - amidohydrolase family protein, at 750,105 to 751,088 _RS29160 ABID97_RS29165: ABID97_RS29165 - MFS transporter, at 751,423 to 752,805 _RS29165 ABID97_RS29170: ABID97_RS29170 - alpha/beta hydrolase, at 752,832 to 753,800 _RS29170 Position (kb) 751 752 753Strain fitness (log2 ratio) -1 0 1at 750.604 kb on + strand, within ABID97_RS29160at 750.664 kb on + strand, within ABID97_RS29160at 750.664 kb on + strand, within ABID97_RS29160at 750.667 kb on + strand, within ABID97_RS29160at 751.088 kb on + strandat 751.088 kb on + strandat 751.088 kb on + strandat 751.089 kb on - strandat 751.171 kb on - strandat 751.253 kb on - strandat 751.936 kb on + strand, within ABID97_RS29165at 751.937 kb on - strand, within ABID97_RS29165at 752.395 kb on + strand, within ABID97_RS29165at 752.911 kb on + strandat 753.079 kb on + strand, within ABID97_RS29170at 753.079 kb on + strand, within ABID97_RS29170at 753.510 kb on - strand, within ABID97_RS29170

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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750,604 + ABID97_RS29160 0.51 -0.1
750,664 + ABID97_RS29160 0.57 -0.2
750,664 + ABID97_RS29160 0.57 +0.2
750,667 + ABID97_RS29160 0.57 -0.1
751,088 + +0.5
751,088 + -0.7
751,088 + -0.4
751,089 - +0.1
751,171 - -0.6
751,253 - -0.9
751,936 + ABID97_RS29165 0.37 +0.5
751,937 - ABID97_RS29165 0.37 -0.5
752,395 + ABID97_RS29165 0.70 +0.0
752,911 + +0.3
753,079 + ABID97_RS29170 0.25 +0.2
753,079 + ABID97_RS29170 0.25 +0.3
753,510 - ABID97_RS29170 0.70 -0.4

Or see this region's nucleotide sequence