Strain Fitness in Variovorax sp. OAS795 around ABID97_RS16060

Experiment: L-Histidine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABID97_RS16050 and ABID97_RS16055 are separated by 20 nucleotidesABID97_RS16055 and ABID97_RS16060 overlap by 4 nucleotidesABID97_RS16060 and ABID97_RS16065 are separated by 24 nucleotidesABID97_RS16065 and ABID97_RS16070 overlap by 4 nucleotides ABID97_RS16050: ABID97_RS16050 - isochorismatase family cysteine hydrolase, at 3,325,120 to 3,325,692 _RS16050 ABID97_RS16055: ABID97_RS16055 - aromatic-ring-hydroxylating dioxygenase subunit beta, at 3,325,713 to 3,326,198 _RS16055 ABID97_RS16060: ABID97_RS16060 - aromatic ring-hydroxylating dioxygenase subunit alpha, at 3,326,195 to 3,327,499 _RS16060 ABID97_RS16065: ABID97_RS16065 - PDR/VanB family oxidoreductase, at 3,327,524 to 3,328,489 _RS16065 ABID97_RS16070: ABID97_RS16070 - dienelactone hydrolase family protein, at 3,328,486 to 3,329,745 _RS16070 Position (kb) 3326 3327 3328Strain fitness (log2 ratio) -1 0 1 2at 3325.257 kb on - strand, within ABID97_RS16050at 3325.437 kb on - strand, within ABID97_RS16050at 3325.964 kb on - strand, within ABID97_RS16055at 3326.227 kb on - strandat 3326.227 kb on - strandat 3326.379 kb on + strand, within ABID97_RS16060at 3326.574 kb on + strand, within ABID97_RS16060at 3326.575 kb on - strand, within ABID97_RS16060at 3327.273 kb on + strand, within ABID97_RS16060at 3327.274 kb on - strand, within ABID97_RS16060at 3327.274 kb on - strand, within ABID97_RS16060at 3327.274 kb on - strand, within ABID97_RS16060at 3327.384 kb on + strandat 3327.385 kb on - strandat 3327.385 kb on - strandat 3327.444 kb on + strandat 3327.687 kb on + strand, within ABID97_RS16065at 3328.030 kb on + strand, within ABID97_RS16065at 3328.055 kb on + strand, within ABID97_RS16065

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Per-strain Table

Position Strand Gene LocusTag Fraction L-Histidine (C)
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3,325,257 - ABID97_RS16050 0.24 -0.2
3,325,437 - ABID97_RS16050 0.55 +2.1
3,325,964 - ABID97_RS16055 0.52 -0.6
3,326,227 - +0.0
3,326,227 - -0.0
3,326,379 + ABID97_RS16060 0.14 +0.2
3,326,574 + ABID97_RS16060 0.29 -0.6
3,326,575 - ABID97_RS16060 0.29 +1.5
3,327,273 + ABID97_RS16060 0.83 -0.3
3,327,274 - ABID97_RS16060 0.83 +0.5
3,327,274 - ABID97_RS16060 0.83 +0.0
3,327,274 - ABID97_RS16060 0.83 -0.4
3,327,384 + -0.4
3,327,385 - +0.2
3,327,385 - +0.8
3,327,444 + -0.2
3,327,687 + ABID97_RS16065 0.17 -0.8
3,328,030 + ABID97_RS16065 0.52 -1.2
3,328,055 + ABID97_RS16065 0.55 +1.0

Or see this region's nucleotide sequence