Strain Fitness in Pseudomonas fluorescens GW456-L13 around PfGW456L13_845

Experiment: Putrescine (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPfGW456L13_843 and PfGW456L13_844 are separated by 13 nucleotidesPfGW456L13_844 and PfGW456L13_845 are separated by 4 nucleotidesPfGW456L13_845 and PfGW456L13_846 are separated by 12 nucleotidesPfGW456L13_846 and PfGW456L13_847 overlap by 18 nucleotidesPfGW456L13_847 and PfGW456L13_848 overlap by 1 nucleotides PfGW456L13_843 - Protein of unknown function DUF484, at 950,686 to 951,411 _843 PfGW456L13_844 - Diaminopimelate epimerase (EC 5.1.1.7), at 951,425 to 952,255 _844 PfGW456L13_845 - Diaminopimelate decarboxylase (EC 4.1.1.20), at 952,260 to 953,507 _845 PfGW456L13_846 - Lipoprotein LppL-related protein, at 953,520 to 953,645 _846 PfGW456L13_847 - hypothetical protein, at 953,628 to 953,906 _847 PfGW456L13_848 - Frataxin homolog CyaY, facilitates iron supply for heme A synthesis or Fe-S cluster assembly, at 953,906 to 954,238 _848 Position (kb) 952 953 954Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 951.270 kb on + strand, within PfGW456L13_843at 951.338 kb on - strand, within PfGW456L13_843at 951.338 kb on - strand, within PfGW456L13_843at 951.447 kb on + strandat 951.447 kb on + strandat 951.447 kb on + strandat 951.447 kb on + strandat 951.448 kb on - strandat 951.448 kb on - strandat 951.448 kb on - strandat 951.448 kb on - strandat 951.449 kb on + strandat 951.449 kb on + strandat 951.449 kb on + strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.450 kb on - strandat 951.537 kb on - strand, within PfGW456L13_844at 951.835 kb on - strand, within PfGW456L13_844at 952.240 kb on + strandat 952.240 kb on + strandat 952.240 kb on + strandat 952.241 kb on - strandat 952.262 kb on - strandat 952.288 kb on + strandat 952.288 kb on + strandat 952.288 kb on + strandat 952.288 kb on + strandat 952.288 kb on + strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.289 kb on - strandat 952.375 kb on + strandat 952.375 kb on + strandat 952.376 kb on - strandat 952.376 kb on - strandat 952.376 kb on - strandat 952.562 kb on - strand, within PfGW456L13_845at 952.562 kb on - strand, within PfGW456L13_845at 952.562 kb on - strand, within PfGW456L13_845at 952.637 kb on - strand, within PfGW456L13_845at 952.744 kb on + strand, within PfGW456L13_845at 952.744 kb on + strand, within PfGW456L13_845at 952.745 kb on - strand, within PfGW456L13_845at 952.745 kb on - strand, within PfGW456L13_845at 952.745 kb on - strand, within PfGW456L13_845at 952.745 kb on - strand, within PfGW456L13_845at 952.819 kb on + strand, within PfGW456L13_845at 952.819 kb on + strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.820 kb on - strand, within PfGW456L13_845at 952.963 kb on + strand, within PfGW456L13_845at 952.963 kb on + strand, within PfGW456L13_845at 952.963 kb on + strand, within PfGW456L13_845at 952.963 kb on + strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 952.964 kb on - strand, within PfGW456L13_845at 953.026 kb on + strand, within PfGW456L13_845at 953.339 kb on - strand, within PfGW456L13_845at 953.377 kb on + strand, within PfGW456L13_845at 953.378 kb on - strand, within PfGW456L13_845at 953.387 kb on - strandat 953.387 kb on - strandat 953.387 kb on - strandat 953.387 kb on - strandat 953.419 kb on + strandat 953.419 kb on + strandat 953.420 kb on - strandat 953.420 kb on - strandat 953.420 kb on - strandat 953.420 kb on - strandat 953.420 kb on - strandat 953.420 kb on - strandat 953.429 kb on + strandat 953.492 kb on - strandat 953.495 kb on + strandat 953.496 kb on - strandat 953.496 kb on - strandat 953.496 kb on - strandat 953.518 kb on + strandat 953.518 kb on + strandat 953.518 kb on + strandat 953.519 kb on - strandat 953.519 kb on - strandat 953.519 kb on - strandat 953.522 kb on - strandat 953.522 kb on - strandat 953.522 kb on - strandat 953.527 kb on + strandat 953.527 kb on + strandat 953.528 kb on - strandat 953.528 kb on - strandat 953.528 kb on - strandat 953.720 kb on - strand, within PfGW456L13_847at 953.720 kb on - strand, within PfGW456L13_847at 953.720 kb on - strand, within PfGW456L13_847at 953.734 kb on - strand, within PfGW456L13_847at 953.735 kb on + strand, within PfGW456L13_847at 953.759 kb on - strand, within PfGW456L13_847at 953.830 kb on - strand, within PfGW456L13_847at 953.858 kb on + strand, within PfGW456L13_847at 953.859 kb on - strand, within PfGW456L13_847at 954.122 kb on + strand, within PfGW456L13_848at 954.190 kb on + strand, within PfGW456L13_848at 954.190 kb on + strand, within PfGW456L13_848at 954.191 kb on - strand, within PfGW456L13_848at 954.191 kb on - strand, within PfGW456L13_848at 954.283 kb on - strandat 954.283 kb on - strandat 954.380 kb on + strandat 954.380 kb on + strandat 954.381 kb on - strandat 954.381 kb on - strandat 954.381 kb on - strandat 954.413 kb on + strandat 954.413 kb on + strandat 954.414 kb on - strandat 954.460 kb on - strandat 954.460 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Putrescine (C)
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951,270 + PfGW456L13_843 0.80 +0.9
951,338 - PfGW456L13_843 0.90 -1.2
951,338 - PfGW456L13_843 0.90 +0.0
951,447 + +0.5
951,447 + +0.6
951,447 + -0.9
951,447 + +0.4
951,448 - -0.4
951,448 - -0.9
951,448 - +0.2
951,448 - -0.1
951,449 + -1.0
951,449 + -0.4
951,449 + -0.1
951,450 - +0.2
951,450 - +0.8
951,450 - +1.8
951,450 - -1.7
951,450 - +0.7
951,450 - +0.5
951,450 - -0.6
951,450 - -2.7
951,450 - -0.4
951,450 - -0.9
951,450 - -0.1
951,450 - -1.9
951,450 - +0.9
951,450 - +1.5
951,450 - +0.1
951,450 - -1.4
951,537 - PfGW456L13_844 0.13 -1.1
951,835 - PfGW456L13_844 0.49 +1.4
952,240 + +1.4
952,240 + +0.0
952,240 + -1.5
952,241 - -0.6
952,262 - -2.9
952,288 + +0.8
952,288 + +0.4
952,288 + +0.2
952,288 + +1.8
952,288 + +0.0
952,289 - -1.0
952,289 - -1.2
952,289 - -1.7
952,289 - -0.6
952,289 - -0.5
952,289 - -1.7
952,289 - -0.6
952,289 - -1.4
952,289 - -1.6
952,289 - -0.5
952,289 - -0.7
952,289 - -1.5
952,375 + -0.8
952,375 + +0.4
952,376 - -1.7
952,376 - -1.0
952,376 - -0.6
952,562 - PfGW456L13_845 0.24 -0.9
952,562 - PfGW456L13_845 0.24 -1.1
952,562 - PfGW456L13_845 0.24 -1.5
952,637 - PfGW456L13_845 0.30 -2.1
952,744 + PfGW456L13_845 0.39 -0.1
952,744 + PfGW456L13_845 0.39 -1.0
952,745 - PfGW456L13_845 0.39 -0.4
952,745 - PfGW456L13_845 0.39 -1.6
952,745 - PfGW456L13_845 0.39 -0.4
952,745 - PfGW456L13_845 0.39 -2.2
952,819 + PfGW456L13_845 0.45 +0.8
952,819 + PfGW456L13_845 0.45 +0.6
952,820 - PfGW456L13_845 0.45 -1.3
952,820 - PfGW456L13_845 0.45 +0.0
952,820 - PfGW456L13_845 0.45 -0.6
952,820 - PfGW456L13_845 0.45 -1.4
952,820 - PfGW456L13_845 0.45 -1.7
952,820 - PfGW456L13_845 0.45 -1.1
952,963 + PfGW456L13_845 0.56 -0.7
952,963 + PfGW456L13_845 0.56 -1.5
952,963 + PfGW456L13_845 0.56 -0.1
952,963 + PfGW456L13_845 0.56 +0.0
952,964 - PfGW456L13_845 0.56 +0.0
952,964 - PfGW456L13_845 0.56 -1.7
952,964 - PfGW456L13_845 0.56 -1.3
952,964 - PfGW456L13_845 0.56 -0.8
952,964 - PfGW456L13_845 0.56 -2.3
952,964 - PfGW456L13_845 0.56 -0.4
952,964 - PfGW456L13_845 0.56 -1.0
952,964 - PfGW456L13_845 0.56 -1.8
953,026 + PfGW456L13_845 0.61 -0.7
953,339 - PfGW456L13_845 0.86 -1.6
953,377 + PfGW456L13_845 0.90 +0.0
953,378 - PfGW456L13_845 0.90 -1.8
953,387 - +0.0
953,387 - -0.4
953,387 - -1.7
953,387 - -1.8
953,419 + +0.0
953,419 + -0.6
953,420 - +0.7
953,420 - -1.1
953,420 - -0.2
953,420 - -1.4
953,420 - -0.9
953,420 - -1.1
953,429 + +0.6
953,492 - -1.2
953,495 + -0.8
953,496 - -1.3
953,496 - -0.7
953,496 - -1.9
953,518 + +0.2
953,518 + -0.6
953,518 + +0.8
953,519 - +0.1
953,519 - +1.4
953,519 - +0.4
953,522 - +1.5
953,522 - -3.2
953,522 - +0.5
953,527 + +1.6
953,527 + +0.2
953,528 - -0.5
953,528 - -1.2
953,528 - -1.5
953,720 - PfGW456L13_847 0.33 +1.0
953,720 - PfGW456L13_847 0.33 +0.7
953,720 - PfGW456L13_847 0.33 -0.1
953,734 - PfGW456L13_847 0.38 +0.7
953,735 + PfGW456L13_847 0.38 -1.6
953,759 - PfGW456L13_847 0.47 -2.3
953,830 - PfGW456L13_847 0.72 +1.5
953,858 + PfGW456L13_847 0.82 +0.1
953,859 - PfGW456L13_847 0.83 -0.9
954,122 + PfGW456L13_848 0.65 +0.6
954,190 + PfGW456L13_848 0.85 -2.0
954,190 + PfGW456L13_848 0.85 -0.1
954,191 - PfGW456L13_848 0.86 +1.4
954,191 - PfGW456L13_848 0.86 -0.0
954,283 - -1.9
954,283 - -0.3
954,380 + +1.4
954,380 + +0.3
954,381 - -1.6
954,381 - +0.7
954,381 - -2.1
954,413 + +1.3
954,413 + +1.7
954,414 - -2.3
954,460 - +1.8
954,460 - -1.4

Or see this region's nucleotide sequence