Strain Fitness in Pseudomonas sp. S08-1 around OH686_19925

Experiment: D-Glucose (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOH686_19910 and OH686_19915 overlap by 4 nucleotidesOH686_19915 and OH686_19920 overlap by 13 nucleotidesOH686_19920 and OH686_19925 are separated by 1 nucleotidesOH686_19925 and OH686_19930 are separated by 32 nucleotidesOH686_19930 and OH686_19935 are separated by 52 nucleotides OH686_19910: OH686_19910 - Type II/IV secretion system protein TadC, associated with Flp pilus assembly, at 4,077,423 to 4,078,298 _19910 OH686_19915: OH686_19915 - hypothetical protein, at 4,078,295 to 4,078,660 _19915 OH686_19920: OH686_19920 - hypothetical protein, at 4,078,648 to 4,079,100 _19920 OH686_19925: OH686_19925 - hypothetical protein, at 4,079,102 to 4,079,788 _19925 OH686_19930: OH686_19930 - hypothetical protein, at 4,079,821 to 4,080,378 _19930 OH686_19935: OH686_19935 - bacterioferritin, at 4,080,431 to 4,080,901 _19935 Position (kb) 4079 4080Strain fitness (log2 ratio) -2 -1 0 1 2at 4078.323 kb on + strandat 4078.323 kb on + strandat 4078.323 kb on + strandat 4078.377 kb on - strand, within OH686_19915at 4078.377 kb on - strand, within OH686_19915at 4078.439 kb on - strand, within OH686_19915at 4078.456 kb on + strand, within OH686_19915at 4078.456 kb on + strand, within OH686_19915at 4078.456 kb on + strand, within OH686_19915at 4078.456 kb on + strand, within OH686_19915at 4078.457 kb on - strand, within OH686_19915at 4078.457 kb on - strand, within OH686_19915at 4078.457 kb on - strand, within OH686_19915at 4078.457 kb on - strand, within OH686_19915at 4078.464 kb on + strand, within OH686_19915at 4078.464 kb on + strand, within OH686_19915at 4078.464 kb on + strand, within OH686_19915at 4078.464 kb on + strand, within OH686_19915at 4078.465 kb on - strand, within OH686_19915at 4078.478 kb on - strand, within OH686_19915at 4078.478 kb on - strand, within OH686_19915at 4078.485 kb on - strand, within OH686_19915at 4078.485 kb on - strand, within OH686_19915at 4078.524 kb on + strand, within OH686_19915at 4078.525 kb on - strand, within OH686_19915at 4078.663 kb on - strandat 4078.751 kb on - strand, within OH686_19920at 4078.904 kb on + strand, within OH686_19920at 4078.945 kb on + strand, within OH686_19920at 4078.945 kb on + strand, within OH686_19920at 4078.945 kb on + strand, within OH686_19920at 4078.946 kb on - strand, within OH686_19920at 4078.946 kb on - strand, within OH686_19920at 4078.946 kb on - strand, within OH686_19920at 4078.987 kb on + strand, within OH686_19920at 4078.987 kb on + strand, within OH686_19920at 4078.987 kb on + strand, within OH686_19920at 4078.987 kb on + strand, within OH686_19920at 4078.987 kb on + strand, within OH686_19920at 4078.987 kb on + strand, within OH686_19920at 4078.987 kb on + strand, within OH686_19920at 4078.987 kb on + strand, within OH686_19920at 4078.987 kb on + strand, within OH686_19920at 4078.987 kb on + strand, within OH686_19920at 4078.988 kb on - strand, within OH686_19920at 4078.988 kb on - strand, within OH686_19920at 4078.988 kb on - strand, within OH686_19920at 4078.988 kb on - strand, within OH686_19920at 4078.988 kb on - strand, within OH686_19920at 4078.988 kb on - strand, within OH686_19920at 4078.988 kb on - strand, within OH686_19920at 4078.988 kb on - strand, within OH686_19920at 4079.141 kb on + strandat 4079.141 kb on + strandat 4079.141 kb on + strandat 4079.141 kb on + strandat 4079.141 kb on + strandat 4079.141 kb on + strandat 4079.141 kb on + strandat 4079.141 kb on + strandat 4079.141 kb on + strandat 4079.142 kb on - strandat 4079.142 kb on - strandat 4079.182 kb on + strand, within OH686_19925at 4079.200 kb on + strand, within OH686_19925at 4079.200 kb on + strand, within OH686_19925at 4079.201 kb on - strand, within OH686_19925at 4079.201 kb on - strand, within OH686_19925at 4079.201 kb on - strand, within OH686_19925at 4079.201 kb on - strand, within OH686_19925at 4079.201 kb on - strand, within OH686_19925at 4079.204 kb on + strand, within OH686_19925at 4079.204 kb on + strand, within OH686_19925at 4079.204 kb on + strand, within OH686_19925at 4079.204 kb on + strand, within OH686_19925at 4079.205 kb on - strand, within OH686_19925at 4079.205 kb on - strand, within OH686_19925at 4079.224 kb on + strand, within OH686_19925at 4079.225 kb on - strand, within OH686_19925at 4079.272 kb on + strand, within OH686_19925at 4079.272 kb on + strand, within OH686_19925at 4079.272 kb on + strand, within OH686_19925at 4079.272 kb on + strand, within OH686_19925at 4079.272 kb on + strand, within OH686_19925at 4079.272 kb on + strand, within OH686_19925at 4079.272 kb on + strand, within OH686_19925at 4079.272 kb on + strand, within OH686_19925at 4079.273 kb on - strand, within OH686_19925at 4079.273 kb on - strand, within OH686_19925at 4079.273 kb on - strand, within OH686_19925at 4079.273 kb on - strand, within OH686_19925at 4079.273 kb on - strand, within OH686_19925at 4079.273 kb on - strand, within OH686_19925at 4079.276 kb on + strand, within OH686_19925at 4079.276 kb on + strand, within OH686_19925at 4079.276 kb on + strand, within OH686_19925at 4079.277 kb on - strand, within OH686_19925at 4079.277 kb on - strand, within OH686_19925at 4079.277 kb on - strand, within OH686_19925at 4079.277 kb on - strand, within OH686_19925at 4079.386 kb on + strand, within OH686_19925at 4079.468 kb on + strand, within OH686_19925at 4079.468 kb on + strand, within OH686_19925at 4079.469 kb on - strand, within OH686_19925at 4079.469 kb on - strand, within OH686_19925at 4079.495 kb on + strand, within OH686_19925at 4079.495 kb on + strand, within OH686_19925at 4079.495 kb on + strand, within OH686_19925at 4079.495 kb on + strand, within OH686_19925at 4079.496 kb on - strand, within OH686_19925at 4079.496 kb on - strand, within OH686_19925at 4079.496 kb on - strand, within OH686_19925at 4079.496 kb on - strand, within OH686_19925at 4079.496 kb on - strand, within OH686_19925at 4079.549 kb on + strand, within OH686_19925at 4079.550 kb on - strand, within OH686_19925at 4079.666 kb on + strand, within OH686_19925at 4079.666 kb on + strand, within OH686_19925at 4079.666 kb on + strand, within OH686_19925at 4079.666 kb on + strand, within OH686_19925at 4079.666 kb on + strand, within OH686_19925at 4079.666 kb on + strand, within OH686_19925at 4079.666 kb on + strand, within OH686_19925at 4079.666 kb on + strand, within OH686_19925at 4079.666 kb on + strand, within OH686_19925at 4079.666 kb on + strand, within OH686_19925at 4079.666 kb on + strand, within OH686_19925at 4079.666 kb on + strand, within OH686_19925at 4079.666 kb on + strand, within OH686_19925at 4079.667 kb on - strand, within OH686_19925at 4079.667 kb on - strand, within OH686_19925at 4079.667 kb on - strand, within OH686_19925at 4079.667 kb on - strand, within OH686_19925at 4079.667 kb on - strand, within OH686_19925at 4079.667 kb on - strand, within OH686_19925at 4079.667 kb on - strand, within OH686_19925at 4079.667 kb on - strand, within OH686_19925at 4079.667 kb on - strand, within OH686_19925at 4079.667 kb on - strand, within OH686_19925at 4079.728 kb on + strandat 4079.728 kb on + strandat 4079.729 kb on - strandat 4079.729 kb on - strandat 4079.729 kb on - strandat 4079.729 kb on - strandat 4079.729 kb on - strandat 4079.979 kb on - strand, within OH686_19930at 4080.043 kb on + strand, within OH686_19930at 4080.144 kb on + strand, within OH686_19930at 4080.144 kb on + strand, within OH686_19930at 4080.145 kb on - strand, within OH686_19930at 4080.145 kb on - strand, within OH686_19930at 4080.145 kb on - strand, within OH686_19930at 4080.199 kb on + strand, within OH686_19930at 4080.199 kb on + strand, within OH686_19930at 4080.200 kb on - strand, within OH686_19930at 4080.200 kb on - strand, within OH686_19930at 4080.200 kb on - strand, within OH686_19930at 4080.234 kb on + strand, within OH686_19930at 4080.234 kb on + strand, within OH686_19930at 4080.234 kb on + strand, within OH686_19930at 4080.234 kb on + strand, within OH686_19930at 4080.234 kb on + strand, within OH686_19930at 4080.234 kb on + strand, within OH686_19930at 4080.235 kb on - strand, within OH686_19930at 4080.235 kb on - strand, within OH686_19930at 4080.238 kb on + strand, within OH686_19930at 4080.239 kb on - strand, within OH686_19930at 4080.353 kb on - strandat 4080.353 kb on - strandat 4080.353 kb on - strandat 4080.353 kb on - strandat 4080.353 kb on - strandat 4080.367 kb on - strandat 4080.456 kb on + strandat 4080.457 kb on - strandat 4080.457 kb on - strandat 4080.457 kb on - strandat 4080.457 kb on - strandat 4080.457 kb on - strandat 4080.457 kb on - strandat 4080.457 kb on - strandat 4080.457 kb on - strandat 4080.457 kb on - strandat 4080.561 kb on + strand, within OH686_19935at 4080.561 kb on + strand, within OH686_19935at 4080.582 kb on + strand, within OH686_19935at 4080.582 kb on + strand, within OH686_19935at 4080.583 kb on - strand, within OH686_19935at 4080.769 kb on - strand, within OH686_19935

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose (C)
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4,078,323 + +0.0
4,078,323 + +1.2
4,078,323 + +0.2
4,078,377 - OH686_19915 0.22 -1.1
4,078,377 - OH686_19915 0.22 +0.2
4,078,439 - OH686_19915 0.39 +0.2
4,078,456 + OH686_19915 0.44 -2.4
4,078,456 + OH686_19915 0.44 +0.7
4,078,456 + OH686_19915 0.44 +0.1
4,078,456 + OH686_19915 0.44 +1.2
4,078,457 - OH686_19915 0.44 +1.0
4,078,457 - OH686_19915 0.44 +0.3
4,078,457 - OH686_19915 0.44 -0.4
4,078,457 - OH686_19915 0.44 +0.1
4,078,464 + OH686_19915 0.46 -0.0
4,078,464 + OH686_19915 0.46 +0.3
4,078,464 + OH686_19915 0.46 -0.6
4,078,464 + OH686_19915 0.46 -0.4
4,078,465 - OH686_19915 0.46 +0.1
4,078,478 - OH686_19915 0.50 +1.0
4,078,478 - OH686_19915 0.50 +0.2
4,078,485 - OH686_19915 0.52 -0.7
4,078,485 - OH686_19915 0.52 +1.7
4,078,524 + OH686_19915 0.63 -0.2
4,078,525 - OH686_19915 0.63 +0.5
4,078,663 - -1.3
4,078,751 - OH686_19920 0.23 -0.7
4,078,904 + OH686_19920 0.57 +0.1
4,078,945 + OH686_19920 0.66 +0.5
4,078,945 + OH686_19920 0.66 +0.5
4,078,945 + OH686_19920 0.66 -1.7
4,078,946 - OH686_19920 0.66 -0.1
4,078,946 - OH686_19920 0.66 +0.3
4,078,946 - OH686_19920 0.66 +0.2
4,078,987 + OH686_19920 0.75 +0.6
4,078,987 + OH686_19920 0.75 +0.4
4,078,987 + OH686_19920 0.75 +0.1
4,078,987 + OH686_19920 0.75 +0.3
4,078,987 + OH686_19920 0.75 +0.2
4,078,987 + OH686_19920 0.75 +1.4
4,078,987 + OH686_19920 0.75 +0.7
4,078,987 + OH686_19920 0.75 +1.0
4,078,987 + OH686_19920 0.75 -0.6
4,078,987 + OH686_19920 0.75 -2.5
4,078,988 - OH686_19920 0.75 +0.7
4,078,988 - OH686_19920 0.75 +1.1
4,078,988 - OH686_19920 0.75 -0.5
4,078,988 - OH686_19920 0.75 -1.5
4,078,988 - OH686_19920 0.75 +0.0
4,078,988 - OH686_19920 0.75 +0.5
4,078,988 - OH686_19920 0.75 -1.9
4,078,988 - OH686_19920 0.75 -0.8
4,079,141 + +0.3
4,079,141 + -0.9
4,079,141 + -0.5
4,079,141 + +0.4
4,079,141 + +0.5
4,079,141 + +0.0
4,079,141 + +0.2
4,079,141 + -0.2
4,079,141 + -0.1
4,079,142 - +0.2
4,079,142 - -0.5
4,079,182 + OH686_19925 0.12 -0.2
4,079,200 + OH686_19925 0.14 -0.0
4,079,200 + OH686_19925 0.14 +0.3
4,079,201 - OH686_19925 0.14 -0.6
4,079,201 - OH686_19925 0.14 +1.0
4,079,201 - OH686_19925 0.14 -0.4
4,079,201 - OH686_19925 0.14 -0.4
4,079,201 - OH686_19925 0.14 +0.1
4,079,204 + OH686_19925 0.15 +0.3
4,079,204 + OH686_19925 0.15 -0.0
4,079,204 + OH686_19925 0.15 -0.5
4,079,204 + OH686_19925 0.15 -0.3
4,079,205 - OH686_19925 0.15 +0.5
4,079,205 - OH686_19925 0.15 -0.4
4,079,224 + OH686_19925 0.18 +0.4
4,079,225 - OH686_19925 0.18 +0.3
4,079,272 + OH686_19925 0.25 +0.3
4,079,272 + OH686_19925 0.25 -0.6
4,079,272 + OH686_19925 0.25 +0.6
4,079,272 + OH686_19925 0.25 +0.2
4,079,272 + OH686_19925 0.25 -0.5
4,079,272 + OH686_19925 0.25 +0.5
4,079,272 + OH686_19925 0.25 +0.3
4,079,272 + OH686_19925 0.25 +0.3
4,079,273 - OH686_19925 0.25 +0.4
4,079,273 - OH686_19925 0.25 +0.5
4,079,273 - OH686_19925 0.25 -0.4
4,079,273 - OH686_19925 0.25 +0.3
4,079,273 - OH686_19925 0.25 -0.3
4,079,273 - OH686_19925 0.25 -0.8
4,079,276 + OH686_19925 0.25 -0.3
4,079,276 + OH686_19925 0.25 -0.2
4,079,276 + OH686_19925 0.25 -0.5
4,079,277 - OH686_19925 0.25 +0.6
4,079,277 - OH686_19925 0.25 +0.1
4,079,277 - OH686_19925 0.25 -0.4
4,079,277 - OH686_19925 0.25 +0.2
4,079,386 + OH686_19925 0.41 +0.6
4,079,468 + OH686_19925 0.53 +0.4
4,079,468 + OH686_19925 0.53 +2.1
4,079,469 - OH686_19925 0.53 -0.3
4,079,469 - OH686_19925 0.53 -1.7
4,079,495 + OH686_19925 0.57 +0.4
4,079,495 + OH686_19925 0.57 +0.0
4,079,495 + OH686_19925 0.57 +0.7
4,079,495 + OH686_19925 0.57 +0.1
4,079,496 - OH686_19925 0.57 -0.3
4,079,496 - OH686_19925 0.57 +0.1
4,079,496 - OH686_19925 0.57 -0.0
4,079,496 - OH686_19925 0.57 -0.0
4,079,496 - OH686_19925 0.57 +0.3
4,079,549 + OH686_19925 0.65 +0.4
4,079,550 - OH686_19925 0.65 -0.0
4,079,666 + OH686_19925 0.82 +0.2
4,079,666 + OH686_19925 0.82 +0.6
4,079,666 + OH686_19925 0.82 -1.0
4,079,666 + OH686_19925 0.82 +0.0
4,079,666 + OH686_19925 0.82 -1.5
4,079,666 + OH686_19925 0.82 -0.9
4,079,666 + OH686_19925 0.82 -0.2
4,079,666 + OH686_19925 0.82 +0.1
4,079,666 + OH686_19925 0.82 -0.5
4,079,666 + OH686_19925 0.82 -0.2
4,079,666 + OH686_19925 0.82 -0.0
4,079,666 + OH686_19925 0.82 +0.3
4,079,666 + OH686_19925 0.82 +0.3
4,079,667 - OH686_19925 0.82 +0.1
4,079,667 - OH686_19925 0.82 -1.4
4,079,667 - OH686_19925 0.82 -0.2
4,079,667 - OH686_19925 0.82 +0.8
4,079,667 - OH686_19925 0.82 +0.5
4,079,667 - OH686_19925 0.82 +0.4
4,079,667 - OH686_19925 0.82 -0.3
4,079,667 - OH686_19925 0.82 +0.2
4,079,667 - OH686_19925 0.82 -0.5
4,079,667 - OH686_19925 0.82 +0.8
4,079,728 + +0.1
4,079,728 + -0.0
4,079,729 - +0.4
4,079,729 - -0.4
4,079,729 - -0.4
4,079,729 - -0.1
4,079,729 - -0.5
4,079,979 - OH686_19930 0.28 -0.0
4,080,043 + OH686_19930 0.40 -0.1
4,080,144 + OH686_19930 0.58 -1.9
4,080,144 + OH686_19930 0.58 -0.6
4,080,145 - OH686_19930 0.58 -0.0
4,080,145 - OH686_19930 0.58 +0.4
4,080,145 - OH686_19930 0.58 -0.3
4,080,199 + OH686_19930 0.68 +0.3
4,080,199 + OH686_19930 0.68 +0.1
4,080,200 - OH686_19930 0.68 +0.5
4,080,200 - OH686_19930 0.68 -0.5
4,080,200 - OH686_19930 0.68 +1.2
4,080,234 + OH686_19930 0.74 -1.5
4,080,234 + OH686_19930 0.74 -0.0
4,080,234 + OH686_19930 0.74 -1.0
4,080,234 + OH686_19930 0.74 -0.6
4,080,234 + OH686_19930 0.74 +0.4
4,080,234 + OH686_19930 0.74 +1.3
4,080,235 - OH686_19930 0.74 +0.6
4,080,235 - OH686_19930 0.74 +0.2
4,080,238 + OH686_19930 0.75 -0.6
4,080,239 - OH686_19930 0.75 -0.5
4,080,353 - +0.4
4,080,353 - -0.7
4,080,353 - +0.4
4,080,353 - -0.2
4,080,353 - +0.4
4,080,367 - -1.0
4,080,456 + -1.0
4,080,457 - +0.8
4,080,457 - +1.1
4,080,457 - -0.6
4,080,457 - -1.6
4,080,457 - +0.5
4,080,457 - -0.2
4,080,457 - -0.9
4,080,457 - +0.2
4,080,457 - +0.0
4,080,561 + OH686_19935 0.28 -0.2
4,080,561 + OH686_19935 0.28 -0.6
4,080,582 + OH686_19935 0.32 -0.2
4,080,582 + OH686_19935 0.32 +1.0
4,080,583 - OH686_19935 0.32 -0.9
4,080,769 - OH686_19935 0.72 -0.7

Or see this region's nucleotide sequence