Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1536

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1535 and EX28DRAFT_1536 are separated by 175 nucleotidesEX28DRAFT_1536 and EX28DRAFT_1537 overlap by 1 nucleotides EX28DRAFT_1535: EX28DRAFT_1535 - Transcriptional regulator, at 1,549,251 to 1,550,162 _1535 EX28DRAFT_1536: EX28DRAFT_1536 - amidohydrolase, at 1,550,338 to 1,551,648 _1536 EX28DRAFT_1537: EX28DRAFT_1537 - amidohydrolase, at 1,551,648 to 1,553,093 _1537 Position (kb) 1550 1551 1552Strain fitness (log2 ratio) -2 -1 0 1at 1549.341 kb on + strandat 1549.346 kb on - strand, within EX28DRAFT_1535at 1549.348 kb on + strand, within EX28DRAFT_1535at 1549.348 kb on + strand, within EX28DRAFT_1535at 1549.434 kb on + strand, within EX28DRAFT_1535at 1549.469 kb on + strand, within EX28DRAFT_1535at 1549.549 kb on + strand, within EX28DRAFT_1535at 1549.552 kb on + strand, within EX28DRAFT_1535at 1549.553 kb on - strand, within EX28DRAFT_1535at 1549.585 kb on + strand, within EX28DRAFT_1535at 1549.602 kb on - strand, within EX28DRAFT_1535at 1549.708 kb on + strand, within EX28DRAFT_1535at 1549.708 kb on + strand, within EX28DRAFT_1535at 1549.709 kb on - strand, within EX28DRAFT_1535at 1549.743 kb on + strand, within EX28DRAFT_1535at 1549.958 kb on - strand, within EX28DRAFT_1535at 1550.163 kb on - strandat 1550.209 kb on + strandat 1550.210 kb on - strandat 1550.210 kb on - strandat 1550.215 kb on - strandat 1550.279 kb on - strandat 1550.283 kb on - strandat 1550.313 kb on + strandat 1550.314 kb on - strandat 1550.944 kb on + strand, within EX28DRAFT_1536at 1550.961 kb on + strand, within EX28DRAFT_1536at 1550.961 kb on + strand, within EX28DRAFT_1536at 1550.961 kb on + strand, within EX28DRAFT_1536at 1550.961 kb on + strand, within EX28DRAFT_1536at 1551.313 kb on + strand, within EX28DRAFT_1536at 1551.313 kb on + strand, within EX28DRAFT_1536at 1551.514 kb on + strand, within EX28DRAFT_1536at 1551.514 kb on + strand, within EX28DRAFT_1536at 1551.514 kb on + strand, within EX28DRAFT_1536at 1551.515 kb on - strand, within EX28DRAFT_1536at 1551.515 kb on - strand, within EX28DRAFT_1536at 1551.516 kb on + strand, within EX28DRAFT_1536at 1551.647 kb on - strandat 1551.647 kb on - strandat 1551.647 kb on - strandat 1551.669 kb on - strandat 1552.068 kb on + strand, within EX28DRAFT_1537at 1552.110 kb on - strand, within EX28DRAFT_1537at 1552.184 kb on + strand, within EX28DRAFT_1537at 1552.354 kb on - strand, within EX28DRAFT_1537at 1552.417 kb on - strand, within EX28DRAFT_1537at 1552.458 kb on + strand, within EX28DRAFT_1537at 1552.458 kb on + strand, within EX28DRAFT_1537at 1552.458 kb on + strand, within EX28DRAFT_1537at 1552.529 kb on + strand, within EX28DRAFT_1537at 1552.579 kb on - strand, within EX28DRAFT_1537

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,549,341 + +0.4
1,549,346 - EX28DRAFT_1535 0.10 +0.1
1,549,348 + EX28DRAFT_1535 0.11 -0.1
1,549,348 + EX28DRAFT_1535 0.11 -0.1
1,549,434 + EX28DRAFT_1535 0.20 -0.0
1,549,469 + EX28DRAFT_1535 0.24 -0.6
1,549,549 + EX28DRAFT_1535 0.33 -0.2
1,549,552 + EX28DRAFT_1535 0.33 -0.2
1,549,553 - EX28DRAFT_1535 0.33 +0.2
1,549,585 + EX28DRAFT_1535 0.37 +0.6
1,549,602 - EX28DRAFT_1535 0.38 +0.6
1,549,708 + EX28DRAFT_1535 0.50 -0.4
1,549,708 + EX28DRAFT_1535 0.50 +0.5
1,549,709 - EX28DRAFT_1535 0.50 -0.6
1,549,743 + EX28DRAFT_1535 0.54 -0.2
1,549,958 - EX28DRAFT_1535 0.78 +0.2
1,550,163 - +0.7
1,550,209 + +0.2
1,550,210 - -0.1
1,550,210 - -0.3
1,550,215 - +0.3
1,550,279 - +0.4
1,550,283 - +0.1
1,550,313 + -0.1
1,550,314 - +0.3
1,550,944 + EX28DRAFT_1536 0.46 +0.4
1,550,961 + EX28DRAFT_1536 0.48 +0.8
1,550,961 + EX28DRAFT_1536 0.48 +0.7
1,550,961 + EX28DRAFT_1536 0.48 -0.2
1,550,961 + EX28DRAFT_1536 0.48 +0.3
1,551,313 + EX28DRAFT_1536 0.74 +0.3
1,551,313 + EX28DRAFT_1536 0.74 -0.1
1,551,514 + EX28DRAFT_1536 0.90 +0.6
1,551,514 + EX28DRAFT_1536 0.90 +0.9
1,551,514 + EX28DRAFT_1536 0.90 +0.2
1,551,515 - EX28DRAFT_1536 0.90 +0.3
1,551,515 - EX28DRAFT_1536 0.90 +0.0
1,551,516 + EX28DRAFT_1536 0.90 -0.0
1,551,647 - -0.2
1,551,647 - +0.0
1,551,647 - -0.3
1,551,669 - -2.0
1,552,068 + EX28DRAFT_1537 0.29 -0.4
1,552,110 - EX28DRAFT_1537 0.32 +0.4
1,552,184 + EX28DRAFT_1537 0.37 -0.3
1,552,354 - EX28DRAFT_1537 0.49 +0.3
1,552,417 - EX28DRAFT_1537 0.53 -0.4
1,552,458 + EX28DRAFT_1537 0.56 -0.0
1,552,458 + EX28DRAFT_1537 0.56 -1.8
1,552,458 + EX28DRAFT_1537 0.56 +0.6
1,552,529 + EX28DRAFT_1537 0.61 -2.7
1,552,579 - EX28DRAFT_1537 0.64 -0.1

Or see this region's nucleotide sequence