Experiment: MS_media no stress control
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt EX28DRAFT_1012 and EX28DRAFT_1013 are separated by 143 nucleotides EX28DRAFT_1013 and EX28DRAFT_1014 are separated by 262 nucleotides EX28DRAFT_1014 and EX28DRAFT_1015 are separated by 90 nucleotides EX28DRAFT_1015 and EX28DRAFT_1016 are separated by 3 nucleotides
EX28DRAFT_1012: EX28DRAFT_1012 - Predicted membrane protein, at 1,018,765 to 1,019,109
_1012
EX28DRAFT_1013: EX28DRAFT_1013 - hypothetical protein, at 1,019,253 to 1,019,702
_1013
EX28DRAFT_1014: EX28DRAFT_1014 - O-methyltransferase, at 1,019,965 to 1,020,996
_1014
EX28DRAFT_1015: EX28DRAFT_1015 - hypothetical protein, at 1,021,087 to 1,021,284
_1015
EX28DRAFT_1016: EX28DRAFT_1016 - Uncharacterized conserved protein, at 1,021,288 to 1,021,710
_1016
Position (kb)
1019
1020
1021 Strain fitness (log2 ratio)
-1
0
1
2 at 1019.005 kb on - strand, within EX28DRAFT_1012 at 1019.033 kb on - strand, within EX28DRAFT_1012 at 1019.080 kb on + strand at 1019.140 kb on + strand at 1019.140 kb on + strand at 1019.183 kb on + strand at 1019.224 kb on - strand at 1019.334 kb on - strand, within EX28DRAFT_1013 at 1019.343 kb on + strand, within EX28DRAFT_1013 at 1019.364 kb on + strand, within EX28DRAFT_1013 at 1019.451 kb on + strand, within EX28DRAFT_1013 at 1019.453 kb on + strand, within EX28DRAFT_1013 at 1019.453 kb on + strand, within EX28DRAFT_1013 at 1019.523 kb on + strand, within EX28DRAFT_1013 at 1019.680 kb on - strand at 1019.700 kb on + strand at 1019.720 kb on + strand at 1019.827 kb on + strand at 1019.827 kb on + strand at 1019.827 kb on + strand at 1019.838 kb on + strand at 1019.866 kb on + strand at 1019.866 kb on + strand at 1019.908 kb on - strand at 1019.908 kb on - strand at 1019.946 kb on + strand at 1019.976 kb on + strand at 1019.976 kb on + strand at 1019.979 kb on + strand at 1019.980 kb on - strand at 1019.991 kb on - strand at 1020.075 kb on - strand, within EX28DRAFT_1014 at 1020.174 kb on - strand, within EX28DRAFT_1014 at 1020.336 kb on - strand, within EX28DRAFT_1014 at 1020.336 kb on - strand, within EX28DRAFT_1014 at 1020.447 kb on + strand, within EX28DRAFT_1014 at 1020.447 kb on + strand, within EX28DRAFT_1014 at 1020.481 kb on - strand, within EX28DRAFT_1014 at 1020.705 kb on + strand, within EX28DRAFT_1014 at 1020.706 kb on - strand, within EX28DRAFT_1014 at 1020.709 kb on + strand, within EX28DRAFT_1014 at 1020.709 kb on + strand, within EX28DRAFT_1014 at 1020.792 kb on - strand, within EX28DRAFT_1014 at 1020.964 kb on + strand at 1020.986 kb on + strand at 1020.987 kb on - strand at 1020.987 kb on - strand at 1021.015 kb on - strand at 1021.047 kb on + strand at 1021.048 kb on - strand at 1021.072 kb on - strand at 1021.086 kb on + strand at 1021.185 kb on + strand, within EX28DRAFT_1015 at 1021.232 kb on + strand, within EX28DRAFT_1015 at 1021.282 kb on + strand at 1021.458 kb on + strand, within EX28DRAFT_1016 at 1021.458 kb on + strand, within EX28DRAFT_1016 at 1021.459 kb on - strand, within EX28DRAFT_1016 at 1021.731 kb on + strand at 1021.731 kb on + strand at 1021.745 kb on + strand at 1021.745 kb on + strand at 1021.746 kb on - strand at 1021.746 kb on - strand at 1021.778 kb on + strand at 1021.865 kb on - strand at 1021.941 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MS_media no stress control remove 1,019,005 - EX28DRAFT_1012 0.70 +0.3 1,019,033 - EX28DRAFT_1012 0.78 -0.1 1,019,080 + -0.3 1,019,140 + -0.1 1,019,140 + -1.7 1,019,183 + +0.8 1,019,224 - -0.3 1,019,334 - EX28DRAFT_1013 0.18 -0.4 1,019,343 + EX28DRAFT_1013 0.20 -0.0 1,019,364 + EX28DRAFT_1013 0.25 +0.2 1,019,451 + EX28DRAFT_1013 0.44 -0.5 1,019,453 + EX28DRAFT_1013 0.44 +0.5 1,019,453 + EX28DRAFT_1013 0.44 +0.2 1,019,523 + EX28DRAFT_1013 0.60 -0.5 1,019,680 - -0.3 1,019,700 + +0.3 1,019,720 + -0.1 1,019,827 + +0.3 1,019,827 + -0.1 1,019,827 + -1.7 1,019,838 + +1.9 1,019,866 + -0.4 1,019,866 + +0.1 1,019,908 - -1.4 1,019,908 - -0.4 1,019,946 + -0.5 1,019,976 + -0.0 1,019,976 + -0.2 1,019,979 + +0.5 1,019,980 - -0.7 1,019,991 - -0.4 1,020,075 - EX28DRAFT_1014 0.11 +0.3 1,020,174 - EX28DRAFT_1014 0.20 -0.2 1,020,336 - EX28DRAFT_1014 0.36 -0.5 1,020,336 - EX28DRAFT_1014 0.36 -0.2 1,020,447 + EX28DRAFT_1014 0.47 -0.2 1,020,447 + EX28DRAFT_1014 0.47 +1.4 1,020,481 - EX28DRAFT_1014 0.50 +0.1 1,020,705 + EX28DRAFT_1014 0.72 +1.1 1,020,706 - EX28DRAFT_1014 0.72 +2.0 1,020,709 + EX28DRAFT_1014 0.72 -0.2 1,020,709 + EX28DRAFT_1014 0.72 +0.4 1,020,792 - EX28DRAFT_1014 0.80 +0.9 1,020,964 + -0.8 1,020,986 + +0.2 1,020,987 - +0.5 1,020,987 - -0.2 1,021,015 - -0.2 1,021,047 + -0.3 1,021,048 - +0.7 1,021,072 - -0.2 1,021,086 + -0.4 1,021,185 + EX28DRAFT_1015 0.49 +0.2 1,021,232 + EX28DRAFT_1015 0.73 -0.2 1,021,282 + -0.1 1,021,458 + EX28DRAFT_1016 0.40 +0.4 1,021,458 + EX28DRAFT_1016 0.40 +0.8 1,021,459 - EX28DRAFT_1016 0.40 -0.8 1,021,731 + -0.5 1,021,731 + -0.2 1,021,745 + -0.5 1,021,745 + +0.1 1,021,746 - -0.6 1,021,746 - +0.8 1,021,778 + +0.8 1,021,865 - -0.2 1,021,941 - +0.8
Or see this region's nucleotide sequence