Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_1014

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_1012 and EX28DRAFT_1013 are separated by 143 nucleotidesEX28DRAFT_1013 and EX28DRAFT_1014 are separated by 262 nucleotidesEX28DRAFT_1014 and EX28DRAFT_1015 are separated by 90 nucleotidesEX28DRAFT_1015 and EX28DRAFT_1016 are separated by 3 nucleotides EX28DRAFT_1012: EX28DRAFT_1012 - Predicted membrane protein, at 1,018,765 to 1,019,109 _1012 EX28DRAFT_1013: EX28DRAFT_1013 - hypothetical protein, at 1,019,253 to 1,019,702 _1013 EX28DRAFT_1014: EX28DRAFT_1014 - O-methyltransferase, at 1,019,965 to 1,020,996 _1014 EX28DRAFT_1015: EX28DRAFT_1015 - hypothetical protein, at 1,021,087 to 1,021,284 _1015 EX28DRAFT_1016: EX28DRAFT_1016 - Uncharacterized conserved protein, at 1,021,288 to 1,021,710 _1016 Position (kb) 1019 1020 1021Strain fitness (log2 ratio) -1 0 1 2at 1019.005 kb on - strand, within EX28DRAFT_1012at 1019.033 kb on - strand, within EX28DRAFT_1012at 1019.080 kb on + strandat 1019.140 kb on + strandat 1019.140 kb on + strandat 1019.183 kb on + strandat 1019.224 kb on - strandat 1019.334 kb on - strand, within EX28DRAFT_1013at 1019.343 kb on + strand, within EX28DRAFT_1013at 1019.364 kb on + strand, within EX28DRAFT_1013at 1019.451 kb on + strand, within EX28DRAFT_1013at 1019.453 kb on + strand, within EX28DRAFT_1013at 1019.453 kb on + strand, within EX28DRAFT_1013at 1019.523 kb on + strand, within EX28DRAFT_1013at 1019.680 kb on - strandat 1019.700 kb on + strandat 1019.720 kb on + strandat 1019.827 kb on + strandat 1019.827 kb on + strandat 1019.827 kb on + strandat 1019.838 kb on + strandat 1019.866 kb on + strandat 1019.866 kb on + strandat 1019.908 kb on - strandat 1019.908 kb on - strandat 1019.946 kb on + strandat 1019.976 kb on + strandat 1019.976 kb on + strandat 1019.979 kb on + strandat 1019.980 kb on - strandat 1019.991 kb on - strandat 1020.075 kb on - strand, within EX28DRAFT_1014at 1020.174 kb on - strand, within EX28DRAFT_1014at 1020.336 kb on - strand, within EX28DRAFT_1014at 1020.336 kb on - strand, within EX28DRAFT_1014at 1020.447 kb on + strand, within EX28DRAFT_1014at 1020.447 kb on + strand, within EX28DRAFT_1014at 1020.481 kb on - strand, within EX28DRAFT_1014at 1020.705 kb on + strand, within EX28DRAFT_1014at 1020.706 kb on - strand, within EX28DRAFT_1014at 1020.709 kb on + strand, within EX28DRAFT_1014at 1020.709 kb on + strand, within EX28DRAFT_1014at 1020.792 kb on - strand, within EX28DRAFT_1014at 1020.964 kb on + strandat 1020.986 kb on + strandat 1020.987 kb on - strandat 1020.987 kb on - strandat 1021.015 kb on - strandat 1021.047 kb on + strandat 1021.048 kb on - strandat 1021.072 kb on - strandat 1021.086 kb on + strandat 1021.185 kb on + strand, within EX28DRAFT_1015at 1021.232 kb on + strand, within EX28DRAFT_1015at 1021.282 kb on + strandat 1021.458 kb on + strand, within EX28DRAFT_1016at 1021.458 kb on + strand, within EX28DRAFT_1016at 1021.459 kb on - strand, within EX28DRAFT_1016at 1021.731 kb on + strandat 1021.731 kb on + strandat 1021.745 kb on + strandat 1021.745 kb on + strandat 1021.746 kb on - strandat 1021.746 kb on - strandat 1021.778 kb on + strandat 1021.865 kb on - strandat 1021.941 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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1,019,005 - EX28DRAFT_1012 0.70 +0.3
1,019,033 - EX28DRAFT_1012 0.78 -0.1
1,019,080 + -0.3
1,019,140 + -0.1
1,019,140 + -1.7
1,019,183 + +0.8
1,019,224 - -0.3
1,019,334 - EX28DRAFT_1013 0.18 -0.4
1,019,343 + EX28DRAFT_1013 0.20 -0.0
1,019,364 + EX28DRAFT_1013 0.25 +0.2
1,019,451 + EX28DRAFT_1013 0.44 -0.5
1,019,453 + EX28DRAFT_1013 0.44 +0.5
1,019,453 + EX28DRAFT_1013 0.44 +0.2
1,019,523 + EX28DRAFT_1013 0.60 -0.5
1,019,680 - -0.3
1,019,700 + +0.3
1,019,720 + -0.1
1,019,827 + +0.3
1,019,827 + -0.1
1,019,827 + -1.7
1,019,838 + +1.9
1,019,866 + -0.4
1,019,866 + +0.1
1,019,908 - -1.4
1,019,908 - -0.4
1,019,946 + -0.5
1,019,976 + -0.0
1,019,976 + -0.2
1,019,979 + +0.5
1,019,980 - -0.7
1,019,991 - -0.4
1,020,075 - EX28DRAFT_1014 0.11 +0.3
1,020,174 - EX28DRAFT_1014 0.20 -0.2
1,020,336 - EX28DRAFT_1014 0.36 -0.5
1,020,336 - EX28DRAFT_1014 0.36 -0.2
1,020,447 + EX28DRAFT_1014 0.47 -0.2
1,020,447 + EX28DRAFT_1014 0.47 +1.4
1,020,481 - EX28DRAFT_1014 0.50 +0.1
1,020,705 + EX28DRAFT_1014 0.72 +1.1
1,020,706 - EX28DRAFT_1014 0.72 +2.0
1,020,709 + EX28DRAFT_1014 0.72 -0.2
1,020,709 + EX28DRAFT_1014 0.72 +0.4
1,020,792 - EX28DRAFT_1014 0.80 +0.9
1,020,964 + -0.8
1,020,986 + +0.2
1,020,987 - +0.5
1,020,987 - -0.2
1,021,015 - -0.2
1,021,047 + -0.3
1,021,048 - +0.7
1,021,072 - -0.2
1,021,086 + -0.4
1,021,185 + EX28DRAFT_1015 0.49 +0.2
1,021,232 + EX28DRAFT_1015 0.73 -0.2
1,021,282 + -0.1
1,021,458 + EX28DRAFT_1016 0.40 +0.4
1,021,458 + EX28DRAFT_1016 0.40 +0.8
1,021,459 - EX28DRAFT_1016 0.40 -0.8
1,021,731 + -0.5
1,021,731 + -0.2
1,021,745 + -0.5
1,021,745 + +0.1
1,021,746 - -0.6
1,021,746 - +0.8
1,021,778 + +0.8
1,021,865 - -0.2
1,021,941 - +0.8

Or see this region's nucleotide sequence