Strain Fitness in Enterobacter asburiae PDN3 around EX28DRAFT_0358

Experiment: MS_media no stress control

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEX28DRAFT_0357 and EX28DRAFT_0358 are separated by 90 nucleotidesEX28DRAFT_0358 and EX28DRAFT_0359 are separated by 16 nucleotides EX28DRAFT_0357: EX28DRAFT_0357 - Signal transduction histidine kinase, at 324,128 to 326,974 _0357 EX28DRAFT_0358: EX28DRAFT_0358 - Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain, at 327,065 to 327,715 _0358 EX28DRAFT_0359: EX28DRAFT_0359 - Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase/Hpt domain, at 327,732 to 330,404 _0359 Position (kb) 327 328Strain fitness (log2 ratio) -2 -1 0 1 2at 326.188 kb on + strand, within EX28DRAFT_0357at 326.189 kb on - strand, within EX28DRAFT_0357at 326.288 kb on + strand, within EX28DRAFT_0357at 326.333 kb on + strand, within EX28DRAFT_0357at 326.472 kb on + strand, within EX28DRAFT_0357at 326.522 kb on + strand, within EX28DRAFT_0357at 326.523 kb on - strand, within EX28DRAFT_0357at 326.599 kb on + strand, within EX28DRAFT_0357at 327.105 kb on + strandat 327.106 kb on - strandat 327.106 kb on - strandat 327.106 kb on - strandat 327.106 kb on - strandat 327.106 kb on - strandat 327.106 kb on - strandat 327.179 kb on - strand, within EX28DRAFT_0358at 327.493 kb on + strand, within EX28DRAFT_0358at 327.493 kb on + strand, within EX28DRAFT_0358at 327.494 kb on - strand, within EX28DRAFT_0358at 327.494 kb on - strand, within EX28DRAFT_0358at 327.499 kb on - strand, within EX28DRAFT_0358at 327.499 kb on - strand, within EX28DRAFT_0358at 327.525 kb on + strand, within EX28DRAFT_0358at 327.525 kb on + strand, within EX28DRAFT_0358at 327.526 kb on - strand, within EX28DRAFT_0358at 327.526 kb on - strand, within EX28DRAFT_0358at 327.601 kb on + strand, within EX28DRAFT_0358at 327.602 kb on - strand, within EX28DRAFT_0358at 327.624 kb on - strand, within EX28DRAFT_0358at 327.672 kb on - strandat 327.698 kb on + strandat 327.698 kb on + strandat 327.698 kb on + strandat 327.717 kb on + strandat 327.717 kb on + strandat 327.718 kb on - strandat 327.718 kb on - strandat 327.718 kb on - strandat 327.718 kb on - strandat 327.718 kb on - strandat 327.720 kb on - strandat 327.720 kb on - strandat 327.734 kb on - strandat 327.752 kb on - strandat 327.772 kb on + strandat 327.772 kb on + strandat 327.807 kb on + strandat 327.808 kb on - strandat 327.829 kb on - strandat 327.852 kb on - strandat 327.928 kb on + strandat 327.928 kb on + strandat 327.928 kb on + strandat 327.929 kb on - strandat 327.929 kb on - strandat 327.929 kb on - strandat 327.929 kb on - strandat 327.929 kb on - strandat 327.939 kb on - strandat 327.952 kb on - strandat 327.956 kb on + strandat 327.973 kb on + strandat 327.973 kb on + strandat 328.056 kb on + strand, within EX28DRAFT_0359at 328.059 kb on + strand, within EX28DRAFT_0359at 328.060 kb on - strand, within EX28DRAFT_0359at 328.060 kb on - strand, within EX28DRAFT_0359at 328.060 kb on - strand, within EX28DRAFT_0359at 328.065 kb on + strand, within EX28DRAFT_0359at 328.065 kb on + strand, within EX28DRAFT_0359at 328.065 kb on + strand, within EX28DRAFT_0359at 328.092 kb on + strand, within EX28DRAFT_0359at 328.092 kb on + strand, within EX28DRAFT_0359at 328.093 kb on - strand, within EX28DRAFT_0359at 328.094 kb on + strand, within EX28DRAFT_0359at 328.095 kb on - strand, within EX28DRAFT_0359at 328.095 kb on - strand, within EX28DRAFT_0359at 328.097 kb on + strand, within EX28DRAFT_0359at 328.098 kb on - strand, within EX28DRAFT_0359at 328.155 kb on + strand, within EX28DRAFT_0359at 328.182 kb on - strand, within EX28DRAFT_0359at 328.284 kb on - strand, within EX28DRAFT_0359

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Per-strain Table

Position Strand Gene LocusTag Fraction MS_media no stress control
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326,188 + EX28DRAFT_0357 0.72 +0.4
326,189 - EX28DRAFT_0357 0.72 -0.5
326,288 + EX28DRAFT_0357 0.76 -0.2
326,333 + EX28DRAFT_0357 0.77 -0.1
326,472 + EX28DRAFT_0357 0.82 -0.6
326,522 + EX28DRAFT_0357 0.84 -0.5
326,523 - EX28DRAFT_0357 0.84 -0.9
326,599 + EX28DRAFT_0357 0.87 -0.2
327,105 + -2.0
327,106 - -1.3
327,106 - +0.7
327,106 - +0.4
327,106 - +0.3
327,106 - +0.3
327,106 - +0.6
327,179 - EX28DRAFT_0358 0.18 +0.6
327,493 + EX28DRAFT_0358 0.66 -1.5
327,493 + EX28DRAFT_0358 0.66 -0.5
327,494 - EX28DRAFT_0358 0.66 +0.1
327,494 - EX28DRAFT_0358 0.66 -0.2
327,499 - EX28DRAFT_0358 0.67 +0.2
327,499 - EX28DRAFT_0358 0.67 +0.6
327,525 + EX28DRAFT_0358 0.71 +1.1
327,525 + EX28DRAFT_0358 0.71 +0.6
327,526 - EX28DRAFT_0358 0.71 +1.1
327,526 - EX28DRAFT_0358 0.71 +0.5
327,601 + EX28DRAFT_0358 0.82 +0.5
327,602 - EX28DRAFT_0358 0.82 +1.9
327,624 - EX28DRAFT_0358 0.86 -0.3
327,672 - +1.9
327,698 + +0.4
327,698 + +2.1
327,698 + -1.2
327,717 + -0.3
327,717 + -0.0
327,718 - +0.5
327,718 - +0.1
327,718 - -0.3
327,718 - +0.0
327,718 - +0.2
327,720 - +0.8
327,720 - -2.5
327,734 - +0.7
327,752 - -0.3
327,772 + +1.0
327,772 + +0.4
327,807 + +0.5
327,808 - +0.0
327,829 - +0.1
327,852 - -0.3
327,928 + +0.3
327,928 + +0.1
327,928 + +0.3
327,929 - +0.1
327,929 - +0.1
327,929 - +0.0
327,929 - -0.6
327,929 - +0.1
327,939 - +0.6
327,952 - +0.1
327,956 + +0.6
327,973 + +0.8
327,973 + +0.5
328,056 + EX28DRAFT_0359 0.12 +0.2
328,059 + EX28DRAFT_0359 0.12 +0.6
328,060 - EX28DRAFT_0359 0.12 -0.3
328,060 - EX28DRAFT_0359 0.12 -0.3
328,060 - EX28DRAFT_0359 0.12 +0.2
328,065 + EX28DRAFT_0359 0.12 -0.1
328,065 + EX28DRAFT_0359 0.12 -0.3
328,065 + EX28DRAFT_0359 0.12 +0.3
328,092 + EX28DRAFT_0359 0.13 -0.0
328,092 + EX28DRAFT_0359 0.13 +0.0
328,093 - EX28DRAFT_0359 0.14 -0.3
328,094 + EX28DRAFT_0359 0.14 -0.4
328,095 - EX28DRAFT_0359 0.14 -0.7
328,095 - EX28DRAFT_0359 0.14 -0.7
328,097 + EX28DRAFT_0359 0.14 +0.1
328,098 - EX28DRAFT_0359 0.14 -0.4
328,155 + EX28DRAFT_0359 0.16 -0.5
328,182 - EX28DRAFT_0359 0.17 +0.1
328,284 - EX28DRAFT_0359 0.21 -2.0

Or see this region's nucleotide sequence