Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_4244

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_4243 and Psyr_4244 are separated by 341 nucleotidesPsyr_4244 and Psyr_4245 overlap by 8 nucleotides Psyr_4243: Psyr_4243 - Oxidoreductase FAD/NAD(P)-binding:PepSY-associated TM helix:Flavodoxin/nitric oxide synthase, at 5,055,641 to 5,058,163 _4243 Psyr_4244: Psyr_4244 - hypothetical protein, at 5,058,505 to 5,059,749 _4244 Psyr_4245: Psyr_4245 - hypothetical protein, at 5,059,742 to 5,060,749 _4245 Position (kb) 5058 5059 5060Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5057.541 kb on + strand, within Psyr_4243at 5057.541 kb on + strand, within Psyr_4243at 5057.541 kb on + strand, within Psyr_4243at 5057.541 kb on + strand, within Psyr_4243at 5057.541 kb on + strand, within Psyr_4243at 5057.541 kb on + strand, within Psyr_4243at 5057.541 kb on + strand, within Psyr_4243at 5057.542 kb on - strand, within Psyr_4243at 5057.542 kb on - strand, within Psyr_4243at 5057.542 kb on - strand, within Psyr_4243at 5057.542 kb on - strand, within Psyr_4243at 5057.577 kb on + strand, within Psyr_4243at 5057.578 kb on - strand, within Psyr_4243at 5057.578 kb on - strand, within Psyr_4243at 5057.623 kb on + strand, within Psyr_4243at 5057.624 kb on - strand, within Psyr_4243at 5057.700 kb on + strand, within Psyr_4243at 5057.700 kb on + strand, within Psyr_4243at 5057.700 kb on + strand, within Psyr_4243at 5057.701 kb on - strand, within Psyr_4243at 5057.701 kb on - strand, within Psyr_4243at 5057.737 kb on + strand, within Psyr_4243at 5057.737 kb on + strand, within Psyr_4243at 5057.737 kb on + strand, within Psyr_4243at 5057.737 kb on + strand, within Psyr_4243at 5057.738 kb on - strand, within Psyr_4243at 5057.850 kb on + strand, within Psyr_4243at 5057.947 kb on + strandat 5058.075 kb on + strandat 5058.075 kb on + strandat 5058.201 kb on + strandat 5058.202 kb on - strandat 5058.202 kb on - strandat 5058.279 kb on + strandat 5058.291 kb on + strandat 5058.303 kb on + strandat 5058.303 kb on + strandat 5058.303 kb on + strandat 5058.303 kb on + strandat 5058.304 kb on - strandat 5058.365 kb on + strandat 5058.378 kb on + strandat 5058.378 kb on + strandat 5058.378 kb on + strandat 5058.387 kb on - strandat 5058.451 kb on + strandat 5058.451 kb on + strandat 5058.473 kb on + strandat 5058.492 kb on + strandat 5058.501 kb on - strandat 5058.521 kb on - strandat 5058.666 kb on + strand, within Psyr_4244at 5058.666 kb on + strand, within Psyr_4244at 5058.667 kb on - strand, within Psyr_4244at 5058.802 kb on - strand, within Psyr_4244at 5058.855 kb on - strand, within Psyr_4244at 5058.855 kb on - strand, within Psyr_4244at 5058.981 kb on + strand, within Psyr_4244at 5059.061 kb on + strand, within Psyr_4244at 5059.062 kb on - strand, within Psyr_4244at 5059.062 kb on - strand, within Psyr_4244at 5059.062 kb on - strand, within Psyr_4244at 5059.062 kb on - strand, within Psyr_4244at 5059.062 kb on - strand, within Psyr_4244at 5059.062 kb on - strand, within Psyr_4244at 5059.082 kb on + strand, within Psyr_4244at 5059.082 kb on + strand, within Psyr_4244at 5059.082 kb on + strand, within Psyr_4244at 5059.082 kb on + strand, within Psyr_4244at 5059.082 kb on + strand, within Psyr_4244at 5059.082 kb on + strand, within Psyr_4244at 5059.082 kb on + strand, within Psyr_4244at 5059.082 kb on + strand, within Psyr_4244at 5059.083 kb on - strand, within Psyr_4244at 5059.083 kb on - strand, within Psyr_4244at 5059.181 kb on + strand, within Psyr_4244at 5059.181 kb on + strand, within Psyr_4244at 5059.181 kb on + strand, within Psyr_4244at 5059.181 kb on + strand, within Psyr_4244at 5059.181 kb on + strand, within Psyr_4244at 5059.181 kb on + strand, within Psyr_4244at 5059.181 kb on + strand, within Psyr_4244at 5059.181 kb on + strand, within Psyr_4244at 5059.182 kb on - strand, within Psyr_4244at 5059.182 kb on - strand, within Psyr_4244at 5059.182 kb on - strand, within Psyr_4244at 5059.182 kb on - strand, within Psyr_4244at 5059.291 kb on + strand, within Psyr_4244at 5059.292 kb on - strand, within Psyr_4244at 5059.292 kb on - strand, within Psyr_4244at 5059.292 kb on - strand, within Psyr_4244at 5059.292 kb on - strand, within Psyr_4244at 5059.292 kb on - strand, within Psyr_4244at 5059.363 kb on + strand, within Psyr_4244at 5059.364 kb on - strand, within Psyr_4244at 5059.433 kb on + strand, within Psyr_4244at 5059.433 kb on + strand, within Psyr_4244at 5059.434 kb on - strand, within Psyr_4244at 5059.459 kb on - strand, within Psyr_4244at 5059.488 kb on + strand, within Psyr_4244at 5059.635 kb on + strandat 5059.702 kb on - strandat 5059.729 kb on + strandat 5059.731 kb on + strandat 5059.732 kb on - strandat 5059.732 kb on - strandat 5059.765 kb on + strandat 5059.766 kb on - strandat 5059.766 kb on - strandat 5059.889 kb on + strand, within Psyr_4245at 5059.905 kb on - strand, within Psyr_4245at 5060.035 kb on + strand, within Psyr_4245at 5060.043 kb on + strand, within Psyr_4245at 5060.043 kb on + strand, within Psyr_4245at 5060.043 kb on + strand, within Psyr_4245at 5060.043 kb on + strand, within Psyr_4245at 5060.044 kb on - strand, within Psyr_4245at 5060.044 kb on - strand, within Psyr_4245at 5060.044 kb on - strand, within Psyr_4245at 5060.065 kb on + strand, within Psyr_4245at 5060.065 kb on + strand, within Psyr_4245at 5060.182 kb on - strand, within Psyr_4245at 5060.603 kb on + strand, within Psyr_4245at 5060.603 kb on + strand, within Psyr_4245at 5060.604 kb on - strand, within Psyr_4245at 5060.604 kb on - strand, within Psyr_4245at 5060.668 kb on + strandat 5060.669 kb on - strandat 5060.669 kb on - strandat 5060.730 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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5,057,541 + Psyr_4243 0.75 -0.6
5,057,541 + Psyr_4243 0.75 -1.0
5,057,541 + Psyr_4243 0.75 -2.3
5,057,541 + Psyr_4243 0.75 -0.7
5,057,541 + Psyr_4243 0.75 -1.2
5,057,541 + Psyr_4243 0.75 -0.4
5,057,541 + Psyr_4243 0.75 -1.6
5,057,542 - Psyr_4243 0.75 +1.8
5,057,542 - Psyr_4243 0.75 +0.0
5,057,542 - Psyr_4243 0.75 -0.9
5,057,542 - Psyr_4243 0.75 -0.8
5,057,577 + Psyr_4243 0.77 -1.7
5,057,578 - Psyr_4243 0.77 -0.4
5,057,578 - Psyr_4243 0.77 -0.2
5,057,623 + Psyr_4243 0.79 +0.8
5,057,624 - Psyr_4243 0.79 -0.6
5,057,700 + Psyr_4243 0.82 +2.2
5,057,700 + Psyr_4243 0.82 -1.1
5,057,700 + Psyr_4243 0.82 -1.0
5,057,701 - Psyr_4243 0.82 +0.8
5,057,701 - Psyr_4243 0.82 +0.8
5,057,737 + Psyr_4243 0.83 -1.8
5,057,737 + Psyr_4243 0.83 -0.7
5,057,737 + Psyr_4243 0.83 +0.1
5,057,737 + Psyr_4243 0.83 -1.4
5,057,738 - Psyr_4243 0.83 +0.0
5,057,850 + Psyr_4243 0.88 -1.6
5,057,947 + -0.2
5,058,075 + -3.2
5,058,075 + -0.3
5,058,201 + +0.4
5,058,202 - -0.2
5,058,202 - +0.2
5,058,279 + -1.5
5,058,291 + -1.2
5,058,303 + -0.5
5,058,303 + -0.1
5,058,303 + -0.7
5,058,303 + -0.2
5,058,304 - -0.1
5,058,365 + +0.8
5,058,378 + -0.1
5,058,378 + +0.9
5,058,378 + -0.4
5,058,387 - +0.8
5,058,451 + -0.9
5,058,451 + +0.6
5,058,473 + +0.6
5,058,492 + +0.5
5,058,501 - +0.1
5,058,521 - -0.5
5,058,666 + Psyr_4244 0.13 -0.7
5,058,666 + Psyr_4244 0.13 -0.8
5,058,667 - Psyr_4244 0.13 -0.2
5,058,802 - Psyr_4244 0.24 -0.8
5,058,855 - Psyr_4244 0.28 -0.6
5,058,855 - Psyr_4244 0.28 -0.1
5,058,981 + Psyr_4244 0.38 -0.3
5,059,061 + Psyr_4244 0.45 -1.1
5,059,062 - Psyr_4244 0.45 -1.3
5,059,062 - Psyr_4244 0.45 -1.7
5,059,062 - Psyr_4244 0.45 +2.4
5,059,062 - Psyr_4244 0.45 -0.2
5,059,062 - Psyr_4244 0.45 -1.3
5,059,062 - Psyr_4244 0.45 +0.5
5,059,082 + Psyr_4244 0.46 -2.8
5,059,082 + Psyr_4244 0.46 -1.0
5,059,082 + Psyr_4244 0.46 -0.9
5,059,082 + Psyr_4244 0.46 +0.8
5,059,082 + Psyr_4244 0.46 -3.0
5,059,082 + Psyr_4244 0.46 +0.5
5,059,082 + Psyr_4244 0.46 -2.8
5,059,082 + Psyr_4244 0.46 -2.0
5,059,083 - Psyr_4244 0.46 -1.9
5,059,083 - Psyr_4244 0.46 +0.3
5,059,181 + Psyr_4244 0.54 +0.8
5,059,181 + Psyr_4244 0.54 +0.1
5,059,181 + Psyr_4244 0.54 +0.1
5,059,181 + Psyr_4244 0.54 -0.4
5,059,181 + Psyr_4244 0.54 -0.1
5,059,181 + Psyr_4244 0.54 -0.6
5,059,181 + Psyr_4244 0.54 +0.8
5,059,181 + Psyr_4244 0.54 -1.2
5,059,182 - Psyr_4244 0.54 -0.0
5,059,182 - Psyr_4244 0.54 +0.0
5,059,182 - Psyr_4244 0.54 -0.7
5,059,182 - Psyr_4244 0.54 -1.0
5,059,291 + Psyr_4244 0.63 -0.8
5,059,292 - Psyr_4244 0.63 -2.6
5,059,292 - Psyr_4244 0.63 -1.8
5,059,292 - Psyr_4244 0.63 -0.5
5,059,292 - Psyr_4244 0.63 +0.2
5,059,292 - Psyr_4244 0.63 -1.2
5,059,363 + Psyr_4244 0.69 +0.5
5,059,364 - Psyr_4244 0.69 -0.1
5,059,433 + Psyr_4244 0.75 -1.9
5,059,433 + Psyr_4244 0.75 +1.2
5,059,434 - Psyr_4244 0.75 -0.7
5,059,459 - Psyr_4244 0.77 +0.2
5,059,488 + Psyr_4244 0.79 -0.6
5,059,635 + +0.9
5,059,702 - -0.3
5,059,729 + -0.9
5,059,731 + -0.7
5,059,732 - +0.1
5,059,732 - +0.4
5,059,765 + -0.8
5,059,766 - -0.9
5,059,766 - -0.1
5,059,889 + Psyr_4245 0.15 +0.7
5,059,905 - Psyr_4245 0.16 -1.1
5,060,035 + Psyr_4245 0.29 -0.8
5,060,043 + Psyr_4245 0.30 -0.5
5,060,043 + Psyr_4245 0.30 +1.2
5,060,043 + Psyr_4245 0.30 +0.0
5,060,043 + Psyr_4245 0.30 -0.6
5,060,044 - Psyr_4245 0.30 -0.4
5,060,044 - Psyr_4245 0.30 -1.0
5,060,044 - Psyr_4245 0.30 -0.4
5,060,065 + Psyr_4245 0.32 -0.8
5,060,065 + Psyr_4245 0.32 -0.1
5,060,182 - Psyr_4245 0.44 -0.5
5,060,603 + Psyr_4245 0.85 +0.0
5,060,603 + Psyr_4245 0.85 +1.3
5,060,604 - Psyr_4245 0.86 -0.9
5,060,604 - Psyr_4245 0.86 +1.6
5,060,668 + +0.1
5,060,669 - -1.4
5,060,669 - -0.3
5,060,730 - -1.1

Or see this region's nucleotide sequence