Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3384

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_3383 and Psyr_3384 are separated by 59 nucleotidesPsyr_3384 and Psyr_3385 are separated by 11 nucleotides Psyr_3383: Psyr_3383 - extracellular solute-binding protein, family 1, at 4,042,927 to 4,043,952 _3383 Psyr_3384: Psyr_3384 - lipoprotein, putative, at 4,044,012 to 4,044,419 _3384 Psyr_3385: Psyr_3385 - TPR repeat protein, at 4,044,431 to 4,045,624 _3385 Position (kb) 4044 4045Strain fitness (log2 ratio) -2 -1 0 1 2 3at 4043.044 kb on + strand, within Psyr_3383at 4043.045 kb on - strand, within Psyr_3383at 4043.065 kb on + strand, within Psyr_3383at 4043.065 kb on + strand, within Psyr_3383at 4043.066 kb on - strand, within Psyr_3383at 4043.074 kb on + strand, within Psyr_3383at 4043.075 kb on - strand, within Psyr_3383at 4043.428 kb on + strand, within Psyr_3383at 4043.429 kb on - strand, within Psyr_3383at 4043.550 kb on + strand, within Psyr_3383at 4043.550 kb on + strand, within Psyr_3383at 4043.551 kb on - strand, within Psyr_3383at 4043.551 kb on - strand, within Psyr_3383at 4043.740 kb on + strand, within Psyr_3383at 4043.740 kb on + strand, within Psyr_3383at 4043.740 kb on + strand, within Psyr_3383at 4043.749 kb on + strand, within Psyr_3383at 4043.750 kb on - strand, within Psyr_3383at 4043.750 kb on - strand, within Psyr_3383at 4043.750 kb on - strand, within Psyr_3383at 4043.827 kb on + strand, within Psyr_3383at 4043.827 kb on + strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.828 kb on - strand, within Psyr_3383at 4043.829 kb on + strand, within Psyr_3383at 4043.829 kb on + strand, within Psyr_3383at 4043.938 kb on + strandat 4043.938 kb on + strandat 4043.950 kb on + strandat 4043.951 kb on - strandat 4043.951 kb on - strandat 4043.951 kb on - strandat 4043.999 kb on - strandat 4044.017 kb on + strandat 4044.018 kb on - strandat 4044.118 kb on + strand, within Psyr_3384at 4044.119 kb on - strand, within Psyr_3384at 4044.121 kb on + strand, within Psyr_3384at 4044.121 kb on + strand, within Psyr_3384at 4044.121 kb on + strand, within Psyr_3384at 4044.121 kb on + strand, within Psyr_3384at 4044.121 kb on + strand, within Psyr_3384at 4044.121 kb on + strand, within Psyr_3384at 4044.121 kb on + strand, within Psyr_3384at 4044.122 kb on - strand, within Psyr_3384at 4044.122 kb on - strand, within Psyr_3384at 4044.122 kb on - strand, within Psyr_3384at 4044.122 kb on - strand, within Psyr_3384at 4044.136 kb on + strand, within Psyr_3384at 4044.137 kb on - strand, within Psyr_3384at 4044.166 kb on + strand, within Psyr_3384at 4044.167 kb on - strand, within Psyr_3384at 4044.167 kb on - strand, within Psyr_3384at 4044.275 kb on + strand, within Psyr_3384at 4044.276 kb on - strand, within Psyr_3384at 4044.336 kb on - strand, within Psyr_3384at 4044.336 kb on - strand, within Psyr_3384at 4044.415 kb on + strandat 4044.419 kb on + strandat 4044.419 kb on + strandat 4044.419 kb on + strandat 4044.419 kb on + strandat 4044.419 kb on + strandat 4044.420 kb on - strandat 4044.420 kb on - strandat 4044.420 kb on - strandat 4044.432 kb on + strandat 4044.433 kb on - strandat 4044.433 kb on - strandat 4044.476 kb on - strandat 4044.476 kb on - strandat 4044.719 kb on + strand, within Psyr_3385at 4044.775 kb on + strand, within Psyr_3385

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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4,043,044 + Psyr_3383 0.11 +1.9
4,043,045 - Psyr_3383 0.12 -1.1
4,043,065 + Psyr_3383 0.13 -0.8
4,043,065 + Psyr_3383 0.13 +1.6
4,043,066 - Psyr_3383 0.14 -0.4
4,043,074 + Psyr_3383 0.14 +1.0
4,043,075 - Psyr_3383 0.14 +0.2
4,043,428 + Psyr_3383 0.49 -1.5
4,043,429 - Psyr_3383 0.49 -0.8
4,043,550 + Psyr_3383 0.61 +0.7
4,043,550 + Psyr_3383 0.61 +0.4
4,043,551 - Psyr_3383 0.61 -0.5
4,043,551 - Psyr_3383 0.61 -0.3
4,043,740 + Psyr_3383 0.79 +0.4
4,043,740 + Psyr_3383 0.79 +0.7
4,043,740 + Psyr_3383 0.79 +0.9
4,043,749 + Psyr_3383 0.80 -0.6
4,043,750 - Psyr_3383 0.80 -0.6
4,043,750 - Psyr_3383 0.80 -0.1
4,043,750 - Psyr_3383 0.80 +0.6
4,043,827 + Psyr_3383 0.88 +0.5
4,043,827 + Psyr_3383 0.88 +0.2
4,043,828 - Psyr_3383 0.88 -2.2
4,043,828 - Psyr_3383 0.88 +0.5
4,043,828 - Psyr_3383 0.88 +0.6
4,043,828 - Psyr_3383 0.88 -0.5
4,043,828 - Psyr_3383 0.88 -0.0
4,043,828 - Psyr_3383 0.88 -1.3
4,043,828 - Psyr_3383 0.88 -0.3
4,043,828 - Psyr_3383 0.88 -0.4
4,043,828 - Psyr_3383 0.88 -0.6
4,043,829 + Psyr_3383 0.88 -2.1
4,043,829 + Psyr_3383 0.88 -0.9
4,043,938 + -0.1
4,043,938 + -0.4
4,043,950 + +0.2
4,043,951 - -0.4
4,043,951 - +0.4
4,043,951 - +0.6
4,043,999 - -0.8
4,044,017 + +0.9
4,044,018 - -0.0
4,044,118 + Psyr_3384 0.26 +0.5
4,044,119 - Psyr_3384 0.26 +0.1
4,044,121 + Psyr_3384 0.27 -0.2
4,044,121 + Psyr_3384 0.27 +1.2
4,044,121 + Psyr_3384 0.27 +0.4
4,044,121 + Psyr_3384 0.27 +0.3
4,044,121 + Psyr_3384 0.27 +2.8
4,044,121 + Psyr_3384 0.27 +0.6
4,044,121 + Psyr_3384 0.27 -0.8
4,044,122 - Psyr_3384 0.27 -2.7
4,044,122 - Psyr_3384 0.27 +1.5
4,044,122 - Psyr_3384 0.27 +1.1
4,044,122 - Psyr_3384 0.27 +0.7
4,044,136 + Psyr_3384 0.30 +1.2
4,044,137 - Psyr_3384 0.31 -0.2
4,044,166 + Psyr_3384 0.38 +1.0
4,044,167 - Psyr_3384 0.38 +0.4
4,044,167 - Psyr_3384 0.38 +0.2
4,044,275 + Psyr_3384 0.64 +1.5
4,044,276 - Psyr_3384 0.65 +1.9
4,044,336 - Psyr_3384 0.79 +1.2
4,044,336 - Psyr_3384 0.79 +0.6
4,044,415 + -0.9
4,044,419 + +2.8
4,044,419 + -0.9
4,044,419 + -0.1
4,044,419 + +1.8
4,044,419 + +0.5
4,044,420 - +0.4
4,044,420 - +0.6
4,044,420 - +1.2
4,044,432 + -0.4
4,044,433 - +0.6
4,044,433 - -0.9
4,044,476 - +0.6
4,044,476 - +0.6
4,044,719 + Psyr_3385 0.24 -1.6
4,044,775 + Psyr_3385 0.29 -0.2

Or see this region's nucleotide sequence