Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3328

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
3,979,147	+				+0.2
3,979,148	-				-0.6
3,979,152	+				+0.6
3,979,176	+				-0.5
3,979,176	+				-0.8
3,979,176	+				-0.5
3,979,203	+				-0.8
3,979,203	+				-0.8
3,979,203	+				-1.5
3,979,204	-				+0.2
3,979,204	-				-0.2
3,979,204	-				+1.1
3,979,616	+		Psyr_3327	0.47	-0.5
3,979,616	+		Psyr_3327	0.47	-1.4
3,979,616	+		Psyr_3327	0.47	-0.9
3,979,616	+		Psyr_3327	0.47	+0.0
3,979,617	-		Psyr_3327	0.47	+1.9
3,979,617	-		Psyr_3327	0.47	+0.0
3,979,617	-		Psyr_3327	0.47	-0.5
3,979,617	-		Psyr_3327	0.47	+0.5
3,979,617	-		Psyr_3327	0.47	+1.1
3,979,617	-		Psyr_3327	0.47	+0.7
3,979,617	-		Psyr_3327	0.47	+0.0
3,979,617	-		Psyr_3327	0.47	+1.8
3,979,617	-		Psyr_3327	0.47	+0.1
3,979,617	-		Psyr_3327	0.47	+0.5
3,979,617	-		Psyr_3327	0.47	-0.9
3,980,070	-				-0.7
3,980,134	+				-0.5
3,980,253	+		Psyr_3328	0.13	-1.6
3,980,253	+		Psyr_3328	0.13	-0.9
3,980,254	-		Psyr_3328	0.13	+0.6
3,980,255	+		Psyr_3328	0.13	-0.1
3,980,255	+		Psyr_3328	0.13	-1.1
3,980,255	+		Psyr_3328	0.13	+0.2
3,980,255	+				+1.2
3,980,255	+		Psyr_3328	0.13	-1.0
3,980,255	+		Psyr_3328	0.13	-2.9
3,980,255	+		Psyr_3328	0.13	+0.2
3,980,255	+		Psyr_3328	0.13	-1.1
3,980,255	+		Psyr_3328	0.13	-1.1
3,980,255	+		Psyr_3328	0.13	-0.9
3,980,255	+		Psyr_3328	0.13	-1.9
3,980,255	+		Psyr_3328	0.13	+0.8
3,980,256	-		Psyr_3328	0.13	+1.2
3,980,256	-		Psyr_3328	0.13	-0.6
3,980,256	-		Psyr_3328	0.13	+0.2
3,980,256	-		Psyr_3328	0.13	-0.3
3,980,256	-		Psyr_3328	0.13	+0.0
3,980,256	-		Psyr_3328	0.13	-1.7
3,980,256	-		Psyr_3328	0.13	+1.2
3,980,256	-		Psyr_3328	0.13	-0.8
3,980,256	-		Psyr_3328	0.13	-1.6
3,980,256	-		Psyr_3328	0.13	-0.0
3,980,256	-		Psyr_3328	0.13	+0.4
3,980,256	-		Psyr_3328	0.13	+1.2
3,980,256	-		Psyr_3328	0.13	-0.2
3,980,406	+		Psyr_3328	0.23	-2.8
3,980,407	-		Psyr_3328	0.23	+0.4
3,980,443	+		Psyr_3328	0.25	-0.9
3,980,443	+		Psyr_3328	0.25	+0.5
3,980,444	-		Psyr_3328	0.25	-0.8
3,980,444	-		Psyr_3328	0.25	+0.0
3,980,455	+		Psyr_3328	0.26	-2.6
3,980,456	-		Psyr_3328	0.26	-0.3
3,980,456	-		Psyr_3328	0.26	+0.5
3,980,487	-		Psyr_3328	0.28	+1.0
3,980,815	+		Psyr_3328	0.47	+0.2
3,980,815	+		Psyr_3328	0.47	-0.4
3,980,815	+		Psyr_3328	0.47	-0.2
3,980,815	+		Psyr_3328	0.47	-1.4
3,980,815	+		Psyr_3328	0.47	-1.4
3,980,815	+		Psyr_3328	0.47	-0.6
3,980,815	+		Psyr_3328	0.47	-0.2
3,980,815	+		Psyr_3328	0.47	-1.6
3,980,815	+		Psyr_3328	0.47	-0.5
3,980,815	+		Psyr_3328	0.47	+2.2
3,980,815	+		Psyr_3328	0.47	-0.6
3,980,815	+		Psyr_3328	0.47	+0.6
3,980,815	+		Psyr_3328	0.47	+0.2
3,980,816	-		Psyr_3328	0.47	-0.2
3,980,816	-		Psyr_3328	0.47	+0.6
3,980,816	-		Psyr_3328	0.47	-0.8
3,980,816	-		Psyr_3328	0.47	-0.2
3,980,816	-		Psyr_3328	0.47	+0.8
3,980,816	-		Psyr_3328	0.47	-1.1
3,980,816	-		Psyr_3328	0.47	-1.6
3,980,816	-		Psyr_3328	0.47	-0.1
3,980,816	-		Psyr_3328	0.47	+2.0
3,980,816	-		Psyr_3328	0.47	-1.1
3,980,816	-		Psyr_3328	0.47	+0.6
3,980,816	-		Psyr_3328	0.47	+1.0
3,980,816	-		Psyr_3328	0.47	+0.2
3,980,816	-		Psyr_3328	0.47	-2.7
3,980,873	-		Psyr_3328	0.51	+0.6
3,980,873	-		Psyr_3328	0.51	+0.1
3,980,997	+		Psyr_3328	0.58	-0.0
3,980,997	+		Psyr_3328	0.58	+0.0
3,980,998	-		Psyr_3328	0.59	+1.2
3,980,998	-		Psyr_3328	0.59	-1.4
3,980,998	-		Psyr_3328	0.59	+0.7
3,981,029	-		Psyr_3328	0.60	-0.7
3,981,029	-		Psyr_3328	0.60	-2.1
3,981,029	-		Psyr_3328	0.60	-0.1
3,981,144	+		Psyr_3328	0.67	-1.4
3,981,144	+		Psyr_3328	0.67	-0.4
3,981,144	+		Psyr_3328	0.67	-2.7
3,981,144	+		Psyr_3328	0.67	+0.1
3,981,144	+		Psyr_3328	0.67	+0.4
3,981,144	+		Psyr_3328	0.67	-0.8
3,981,144	+		Psyr_3328	0.67	-0.8
3,981,144	+		Psyr_3328	0.67	+1.2
3,981,144	+		Psyr_3328	0.67	-1.4
3,981,144	+		Psyr_3328	0.67	+0.6
3,981,145	-		Psyr_3328	0.67	-0.1
3,981,145	-		Psyr_3328	0.67	-0.6
3,981,145	-		Psyr_3328	0.67	-0.1
3,981,145	-		Psyr_3328	0.67	+0.0
3,981,145	-		Psyr_3328	0.67	+1.0
3,981,145	-		Psyr_3328	0.67	+0.6
3,981,146	+		Psyr_3328	0.68	-0.7
3,981,146	+		Psyr_3328	0.68	-1.4
3,981,147	-		Psyr_3328	0.68	-0.8
3,981,147	-		Psyr_3328	0.68	+1.2
3,981,147	-		Psyr_3328	0.68	+0.0
3,981,147	-		Psyr_3328	0.68	-0.2
3,981,178	+		Psyr_3328	0.69	+0.4
3,981,178	+		Psyr_3328	0.69	-1.4
3,981,178	+		Psyr_3328	0.69	+0.4
3,981,179	-		Psyr_3328	0.70	+0.6
3,981,187	+		Psyr_3328	0.70	-0.5
3,981,262	+		Psyr_3328	0.75	+0.9
3,981,262	+		Psyr_3328	0.75	-0.6
3,981,263	-		Psyr_3328	0.75	-2.4
3,981,263	-		Psyr_3328	0.75	-1.9
3,981,263	-		Psyr_3328	0.75	-0.8
3,981,263	-		Psyr_3328	0.75	-0.5
3,981,540	-				-0.7
3,981,540	-				-0.5
3,981,575	+				-1.2
3,981,576	-				+0.2
3,981,576	-				-1.6
3,981,608	+				-1.2
3,981,609	-				+0.2
3,981,641	+				-0.2
3,981,642	-				-1.9
3,981,642	-				+2.0
3,981,642	-				-2.1
3,981,669	+				+0.3
3,981,670	-				-0.2
3,981,707	+				-0.6
3,981,732	-				-1.9
3,981,841	+				-0.9
3,981,842	-				-2.4
3,981,956	-				+0.2
3,981,956	-				+0.4
3,981,957	+				-0.9
3,981,958	-				-0.4
3,982,010	+				+0.9
3,982,010	+				-1.5
3,982,010	+				-1.0
3,982,011	-				-2.7
3,982,011	-				-0.8
3,982,044	-				-0.4
3,982,282	+		Psyr_3329	0.14	+0.0
3,982,283	-		Psyr_3329	0.14	-0.4
3,982,283	-		Psyr_3329	0.14	-2.1
3,982,309	-		Psyr_3329	0.15	-0.9
3,982,309	-		Psyr_3329	0.15	-1.6
3,982,373	+		Psyr_3329	0.18	+0.2
3,982,374	-		Psyr_3329	0.18	-1.1
3,982,496	+		Psyr_3329	0.24	-2.1
3,982,496	+		Psyr_3329	0.24	-0.2
3,982,497	-		Psyr_3329	0.24	+0.2
3,982,497	-		Psyr_3329	0.24	+1.8
3,982,502	+		Psyr_3329	0.24	+1.2
3,982,634	+		Psyr_3329	0.30	-0.6
3,982,634	+		Psyr_3329	0.30	-0.5
3,982,635	-		Psyr_3329	0.30	-0.7