Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3109

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
3,724,863	-				-1.0
3,724,863	-				+0.1
3,724,863	-				-0.3
3,724,924	-				-0.2
3,724,980	+				+0.7
3,724,987	-				-0.5
3,724,987	-				+0.2
3,725,082	-				+0.8
3,725,102	+				+0.8
3,725,103	-				+1.4
3,725,132	+				+2.4
3,725,132	+				+3.7
3,725,133	-				-0.9
3,725,161	+				+0.7
3,725,162	-				+1.1
3,725,166	+				-0.4
3,725,166	+				+0.8
3,725,181	-				+0.4
3,725,236	+		Psyr_3107	0.17	+1.4
3,725,236	+		Psyr_3107	0.17	+0.4
3,725,236	+		Psyr_3107	0.17	+1.9
3,725,237	-		Psyr_3107	0.18	-2.2
3,725,237	-		Psyr_3107	0.18	-0.8
3,725,237	-		Psyr_3107	0.18	-2.3
3,725,483	-				-0.5
3,725,524	-				-0.8
3,725,546	+				-0.6
3,725,547	-				+0.4
3,725,550	+				-0.6
3,725,576	+				-2.6
3,725,576	+				-0.6
3,725,577	-				+0.4
3,725,577	-				-0.1
3,725,577	-				-0.7
3,725,590	+				-0.5
3,725,591	-				+1.4
3,725,591	-				+1.4
3,725,591	-				+0.4
3,725,922	+				-1.1
3,725,922	+				+0.4
3,725,923	-				+0.0
3,725,923	-				-0.0
3,726,083	+		Psyr_3109	0.14	+0.5
3,726,083	+		Psyr_3109	0.14	+2.4
3,726,083	+		Psyr_3109	0.14	+1.1
3,726,083	+		Psyr_3109	0.14	-1.7
3,726,084	-		Psyr_3109	0.14	+0.0
3,726,084	-		Psyr_3109	0.14	-0.9
3,726,084	-		Psyr_3109	0.14	+0.1
3,726,084	-		Psyr_3109	0.14	+0.6
3,726,183	-		Psyr_3109	0.20	+0.6
3,726,205	-		Psyr_3109	0.21	-1.2
3,726,240	+		Psyr_3109	0.23	+0.8
3,726,241	-		Psyr_3109	0.23	+0.4
3,726,279	-		Psyr_3109	0.26	-2.6
3,726,297	+		Psyr_3109	0.27	+0.8
3,726,297	+		Psyr_3109	0.27	+2.4
3,726,297	+		Psyr_3109	0.27	-0.4
3,726,298	-		Psyr_3109	0.27	+0.4
3,726,298	-		Psyr_3109	0.27	-0.5
3,726,298	-		Psyr_3109	0.27	-0.7
3,726,298	-		Psyr_3109	0.27	-0.5
3,726,298	-		Psyr_3109	0.27	+1.1
3,726,426	+		Psyr_3109	0.34	-0.5
3,726,426	+		Psyr_3109	0.34	-0.0
3,726,427	-		Psyr_3109	0.34	+0.6
3,726,427	-		Psyr_3109	0.34	+1.4
3,726,427	-		Psyr_3109	0.34	-0.5
3,726,427	-		Psyr_3109	0.34	-2.3
3,726,468	-		Psyr_3109	0.37	+2.4
3,726,984	+		Psyr_3109	0.67	-1.8
3,726,984	+		Psyr_3109	0.67	-1.7
3,726,985	-		Psyr_3109	0.67	+1.4
3,727,140	+		Psyr_3109	0.76	+2.8
3,727,296	-		Psyr_3109	0.85	+0.3
3,727,336	-		Psyr_3109	0.88	+2.4
3,727,512	+				+0.4
3,727,512	+				-0.4
3,727,515	+				-0.9
3,727,515	+				-0.6
3,727,516	-				-1.2
3,727,516	-				+1.4
3,727,540	+				-0.5
3,727,540	+				+0.6
3,727,540	+				-0.1
3,727,540	+				+0.7
3,727,540	+				+0.4
3,727,541	-				+0.1
3,727,541	-				+0.2
3,727,561	+				-0.0
3,727,561	+				-0.6
3,727,561	+				+3.1
3,727,561	+				-1.0
3,727,561	+				+0.7
3,727,562	-				-0.2
3,727,562	-				+1.7
3,727,562	-				+0.4
3,727,653	+				-0.5
3,727,654	-				+1.4
3,727,677	-				-1.2
3,727,691	-				+0.3
3,727,693	+				+0.1
3,727,693	+				-0.5
3,727,693	+				+0.1
3,727,693	+				-0.2
3,727,694	-				-0.7
3,727,694	-				+0.3
3,727,694	-				-0.2
3,727,694	-				+0.5
3,727,694	-				+0.1
3,727,714	+				+1.6
3,727,715	-				-0.4
3,727,733	+				+0.4
3,727,734	-				-0.1
3,727,734	-				-0.8
3,727,785	-		Psyr_3110	0.13	-0.6
3,727,886	+		Psyr_3110	0.33	-0.1
3,727,886	+		Psyr_3110	0.33	+1.6
3,728,024	+		Psyr_3110	0.60	+0.9
3,728,025	-		Psyr_3110	0.60	+1.4
3,728,095	+		Psyr_3110	0.73	+1.9
3,728,195	+				+0.4
3,728,317	+				-1.2