Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_3029

Experiment: KB with Nalidixic 12.5 ug/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	KB with Nalidixic 12.5 ug/ml
3,626,478	+		Psyr_3028	0.65	-2.7
3,626,478	+		Psyr_3028	0.65	-0.6
3,626,479	-		Psyr_3028	0.65	+0.4
3,626,479	-		Psyr_3028	0.65	-0.6
3,626,668	+				+0.2
3,626,668	+				-1.2
3,626,668	+				-1.9
3,626,668	+				-1.4
3,626,669	-				+0.1
3,626,669	-				-1.2
3,626,669	-				-0.6
3,626,669	-				+1.4
3,626,669	-				+0.4
3,626,699	-				-0.3
3,626,824	-				-3.3
3,626,824	-				+1.4
3,626,847	+				-2.2
3,626,894	-				+0.5
3,626,959	-				+1.8
3,627,004	-				+1.7
3,627,037	+				+1.8
3,627,037	+				-2.0
3,627,037	+				+0.1
3,627,038	-				-0.2
3,627,038	-				-1.6
3,627,038	-				-2.5
3,627,038	-				-0.6
3,627,154	+				-2.3
3,627,154	+				+0.9
3,627,231	-		Psyr_3029	0.11	+0.3
3,627,313	+		Psyr_3029	0.16	+1.7
3,627,485	+		Psyr_3029	0.27	-1.9
3,627,486	-		Psyr_3029	0.27	-0.6
3,627,489	+		Psyr_3029	0.27	+0.3
3,627,489	+		Psyr_3029	0.27	-1.3
3,627,489	+		Psyr_3029	0.27	+0.6
3,627,490	-		Psyr_3029	0.27	-0.6
3,627,665	+		Psyr_3029	0.38	-1.1
3,627,665	+		Psyr_3029	0.38	+1.4
3,627,669	+		Psyr_3029	0.38	+0.8
3,627,669	+		Psyr_3029	0.38	-0.1
3,627,669	+		Psyr_3029	0.38	+1.1
3,627,670	-		Psyr_3029	0.38	-1.2
3,627,670	-		Psyr_3029	0.38	+0.2
3,627,684	-		Psyr_3029	0.39	+2.8
3,627,684	-		Psyr_3029	0.39	+1.4
3,627,824	+		Psyr_3029	0.48	+2.2
3,627,825	-		Psyr_3029	0.48	+0.5
3,627,988	-		Psyr_3029	0.58	-0.7
3,628,034	+		Psyr_3029	0.61	-0.4
3,628,034	+		Psyr_3029	0.61	-1.2
3,628,034	+		Psyr_3029	0.61	-2.7
3,628,034	+		Psyr_3029	0.61	+0.7
3,628,035	-		Psyr_3029	0.61	+0.0
3,628,160	+		Psyr_3029	0.68	-0.2
3,628,163	+		Psyr_3029	0.68	+0.2
3,628,164	-		Psyr_3029	0.69	-0.0
3,628,164	-		Psyr_3029	0.69	-0.9
3,628,403	-		Psyr_3029	0.83	-1.0
3,629,351	+				-1.6
3,629,351	+				-1.0
3,629,351	+				-0.8
3,629,352	-				-1.7
3,629,352	-				+0.0
3,629,352	-				+0.5
3,629,433	+				+0.1
3,629,499	+				-1.2