Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_2626

Experiment: KB with Nalidixic 12.5 ug/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPsyr_2624 and Psyr_2625 are separated by 7 nucleotidesPsyr_2625 and Psyr_2626 are separated by 32 nucleotidesPsyr_2626 and Psyr_2627 overlap by 11 nucleotides Psyr_2624: Psyr_2624 - lipoprotein, putative, at 3,184,308 to 3,184,808 _2624 Psyr_2625: Psyr_2625 - lipoprotein, putative, at 3,184,816 to 3,185,553 _2625 Psyr_2626: Psyr_2626 - Protein of unknown function DUF323, at 3,185,586 to 3,187,133 _2626 Psyr_2627: Psyr_2627 - Protein of unknown function DUF214, at 3,187,123 to 3,188,346 _2627 Position (kb) 3185 3186 3187 3188Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3184.597 kb on + strand, within Psyr_2624at 3184.799 kb on + strandat 3184.802 kb on + strandat 3184.803 kb on - strandat 3184.848 kb on - strandat 3184.938 kb on + strand, within Psyr_2625at 3184.970 kb on + strand, within Psyr_2625at 3184.970 kb on + strand, within Psyr_2625at 3184.979 kb on - strand, within Psyr_2625at 3185.007 kb on + strand, within Psyr_2625at 3185.144 kb on + strand, within Psyr_2625at 3185.144 kb on + strand, within Psyr_2625at 3185.145 kb on - strand, within Psyr_2625at 3185.145 kb on - strand, within Psyr_2625at 3185.145 kb on - strand, within Psyr_2625at 3185.148 kb on + strand, within Psyr_2625at 3185.149 kb on - strand, within Psyr_2625at 3185.179 kb on + strand, within Psyr_2625at 3185.222 kb on + strand, within Psyr_2625at 3185.222 kb on + strand, within Psyr_2625at 3185.223 kb on - strand, within Psyr_2625at 3185.243 kb on + strand, within Psyr_2625at 3185.243 kb on + strand, within Psyr_2625at 3185.243 kb on + strand, within Psyr_2625at 3185.244 kb on - strand, within Psyr_2625at 3185.246 kb on + strand, within Psyr_2625at 3185.246 kb on + strand, within Psyr_2625at 3185.249 kb on + strand, within Psyr_2625at 3185.249 kb on + strand, within Psyr_2625at 3185.249 kb on + strand, within Psyr_2625at 3185.249 kb on + strand, within Psyr_2625at 3185.249 kb on + strand, within Psyr_2625at 3185.250 kb on - strand, within Psyr_2625at 3185.250 kb on - strand, within Psyr_2625at 3185.343 kb on + strand, within Psyr_2625at 3185.347 kb on + strand, within Psyr_2625at 3185.542 kb on + strandat 3185.543 kb on - strandat 3185.543 kb on - strandat 3185.543 kb on - strandat 3185.543 kb on - strandat 3185.543 kb on - strandat 3185.543 kb on - strandat 3185.587 kb on + strandat 3185.601 kb on - strandat 3185.628 kb on + strandat 3185.629 kb on - strandat 3185.781 kb on + strand, within Psyr_2626at 3185.797 kb on + strand, within Psyr_2626at 3185.849 kb on + strand, within Psyr_2626at 3185.899 kb on + strand, within Psyr_2626at 3185.923 kb on + strand, within Psyr_2626at 3185.923 kb on + strand, within Psyr_2626at 3185.923 kb on + strand, within Psyr_2626at 3185.923 kb on + strand, within Psyr_2626at 3185.924 kb on - strand, within Psyr_2626at 3186.268 kb on + strand, within Psyr_2626at 3186.268 kb on + strand, within Psyr_2626at 3186.269 kb on - strand, within Psyr_2626at 3186.272 kb on - strand, within Psyr_2626at 3186.272 kb on - strand, within Psyr_2626at 3186.272 kb on - strand, within Psyr_2626at 3186.272 kb on - strand, within Psyr_2626at 3186.634 kb on - strand, within Psyr_2626at 3186.688 kb on + strand, within Psyr_2626at 3186.688 kb on + strand, within Psyr_2626at 3186.688 kb on + strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.689 kb on - strand, within Psyr_2626at 3186.732 kb on + strand, within Psyr_2626at 3186.811 kb on + strand, within Psyr_2626at 3186.812 kb on - strand, within Psyr_2626at 3186.812 kb on - strand, within Psyr_2626at 3186.826 kb on + strand, within Psyr_2626at 3186.826 kb on + strand, within Psyr_2626at 3186.826 kb on + strand, within Psyr_2626at 3186.826 kb on + strandat 3186.827 kb on - strand, within Psyr_2626at 3186.829 kb on + strand, within Psyr_2626at 3186.840 kb on - strand, within Psyr_2626at 3186.873 kb on - strand, within Psyr_2626at 3186.894 kb on + strand, within Psyr_2626at 3186.894 kb on + strandat 3186.894 kb on + strand, within Psyr_2626at 3186.895 kb on - strand, within Psyr_2626at 3186.895 kb on - strand, within Psyr_2626at 3186.895 kb on - strand, within Psyr_2626at 3186.895 kb on - strand, within Psyr_2626at 3186.904 kb on + strand, within Psyr_2626at 3187.004 kb on + strandat 3187.014 kb on + strandat 3187.015 kb on - strandat 3187.015 kb on - strandat 3187.042 kb on + strandat 3187.316 kb on + strand, within Psyr_2627at 3187.465 kb on + strand, within Psyr_2627at 3187.465 kb on + strand, within Psyr_2627at 3187.466 kb on - strand, within Psyr_2627at 3187.466 kb on - strand, within Psyr_2627at 3187.467 kb on + strand, within Psyr_2627at 3187.468 kb on - strand, within Psyr_2627at 3187.468 kb on - strand, within Psyr_2627at 3187.546 kb on + strand, within Psyr_2627at 3187.546 kb on + strand, within Psyr_2627at 3187.547 kb on - strand, within Psyr_2627at 3187.547 kb on - strand, within Psyr_2627at 3187.584 kb on + strand, within Psyr_2627at 3187.584 kb on + strand, within Psyr_2627at 3187.671 kb on + strand, within Psyr_2627at 3187.671 kb on + strand, within Psyr_2627at 3187.750 kb on + strand, within Psyr_2627at 3188.123 kb on + strand, within Psyr_2627at 3188.123 kb on + strand, within Psyr_2627at 3188.123 kb on + strand, within Psyr_2627

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
remove
3,184,597 + Psyr_2624 0.58 +0.2
3,184,799 + -2.3
3,184,802 + -0.6
3,184,803 - -0.2
3,184,848 - -0.2
3,184,938 + Psyr_2625 0.17 -0.7
3,184,970 + Psyr_2625 0.21 -1.2
3,184,970 + Psyr_2625 0.21 +0.6
3,184,979 - Psyr_2625 0.22 +0.9
3,185,007 + Psyr_2625 0.26 -1.0
3,185,144 + Psyr_2625 0.44 +0.8
3,185,144 + Psyr_2625 0.44 +0.3
3,185,145 - Psyr_2625 0.45 +2.2
3,185,145 - Psyr_2625 0.45 -1.7
3,185,145 - Psyr_2625 0.45 +0.6
3,185,148 + Psyr_2625 0.45 -1.7
3,185,149 - Psyr_2625 0.45 -1.1
3,185,179 + Psyr_2625 0.49 -1.9
3,185,222 + Psyr_2625 0.55 -0.4
3,185,222 + Psyr_2625 0.55 -1.4
3,185,223 - Psyr_2625 0.55 +2.8
3,185,243 + Psyr_2625 0.58 -0.6
3,185,243 + Psyr_2625 0.58 +0.8
3,185,243 + Psyr_2625 0.58 -1.2
3,185,244 - Psyr_2625 0.58 -0.5
3,185,246 + Psyr_2625 0.58 -0.2
3,185,246 + Psyr_2625 0.58 -0.5
3,185,249 + Psyr_2625 0.59 +2.1
3,185,249 + Psyr_2625 0.59 -0.0
3,185,249 + Psyr_2625 0.59 -0.2
3,185,249 + Psyr_2625 0.59 -0.4
3,185,249 + Psyr_2625 0.59 +0.8
3,185,250 - Psyr_2625 0.59 -0.3
3,185,250 - Psyr_2625 0.59 -0.5
3,185,343 + Psyr_2625 0.71 -0.0
3,185,347 + Psyr_2625 0.72 +0.2
3,185,542 + +0.8
3,185,543 - +0.8
3,185,543 - -0.1
3,185,543 - +0.2
3,185,543 - -0.1
3,185,543 - -0.2
3,185,543 - -0.1
3,185,587 + -2.4
3,185,601 - +0.8
3,185,628 + +0.5
3,185,629 - -1.8
3,185,781 + Psyr_2626 0.13 -0.8
3,185,797 + Psyr_2626 0.14 -0.3
3,185,849 + Psyr_2626 0.17 +0.2
3,185,899 + Psyr_2626 0.20 +0.2
3,185,923 + Psyr_2626 0.22 +1.0
3,185,923 + Psyr_2626 0.22 -1.8
3,185,923 + Psyr_2626 0.22 -0.5
3,185,923 + Psyr_2626 0.22 -1.8
3,185,924 - Psyr_2626 0.22 +0.8
3,186,268 + Psyr_2626 0.44 -1.4
3,186,268 + Psyr_2626 0.44 +0.2
3,186,269 - Psyr_2626 0.44 -0.8
3,186,272 - Psyr_2626 0.44 +0.2
3,186,272 - Psyr_2626 0.44 +0.8
3,186,272 - Psyr_2626 0.44 -1.4
3,186,272 - Psyr_2626 0.44 -1.0
3,186,634 - Psyr_2626 0.68 -1.2
3,186,688 + Psyr_2626 0.71 +0.2
3,186,688 + Psyr_2626 0.71 -0.7
3,186,688 + Psyr_2626 0.71 -3.1
3,186,689 - Psyr_2626 0.71 -1.2
3,186,689 - Psyr_2626 0.71 +0.0
3,186,689 - Psyr_2626 0.71 +2.5
3,186,689 - Psyr_2626 0.71 +0.2
3,186,689 - Psyr_2626 0.71 -1.4
3,186,689 - Psyr_2626 0.71 +1.5
3,186,689 - Psyr_2626 0.71 +0.6
3,186,689 - Psyr_2626 0.71 -0.5
3,186,689 - Psyr_2626 0.71 +1.5
3,186,732 + Psyr_2626 0.74 -0.8
3,186,811 + Psyr_2626 0.79 -0.9
3,186,812 - Psyr_2626 0.79 -1.0
3,186,812 - Psyr_2626 0.79 -0.2
3,186,826 + Psyr_2626 0.80 -1.5
3,186,826 + Psyr_2626 0.80 -0.7
3,186,826 + Psyr_2626 0.80 -1.8
3,186,826 + +1.8
3,186,827 - Psyr_2626 0.80 +0.8
3,186,829 + Psyr_2626 0.80 -0.5
3,186,840 - Psyr_2626 0.81 -0.4
3,186,873 - Psyr_2626 0.83 -0.5
3,186,894 + Psyr_2626 0.84 -0.2
3,186,894 + +0.2
3,186,894 + Psyr_2626 0.84 +1.8
3,186,895 - Psyr_2626 0.85 +0.9
3,186,895 - Psyr_2626 0.85 +0.8
3,186,895 - Psyr_2626 0.85 -0.0
3,186,895 - Psyr_2626 0.85 -1.5
3,186,904 + Psyr_2626 0.85 -0.7
3,187,004 + -1.4
3,187,014 + +1.1
3,187,015 - +0.2
3,187,015 - +0.5
3,187,042 + -1.4
3,187,316 + Psyr_2627 0.16 -0.1
3,187,465 + Psyr_2627 0.28 -0.2
3,187,465 + Psyr_2627 0.28 +0.8
3,187,466 - Psyr_2627 0.28 +0.3
3,187,466 - Psyr_2627 0.28 +2.2
3,187,467 + Psyr_2627 0.28 -0.8
3,187,468 - Psyr_2627 0.28 +0.2
3,187,468 - Psyr_2627 0.28 +0.6
3,187,546 + Psyr_2627 0.35 +1.4
3,187,546 + Psyr_2627 0.35 -0.3
3,187,547 - Psyr_2627 0.35 +0.8
3,187,547 - Psyr_2627 0.35 +2.5
3,187,584 + Psyr_2627 0.38 -1.9
3,187,584 + Psyr_2627 0.38 +0.3
3,187,671 + Psyr_2627 0.45 -0.2
3,187,671 + Psyr_2627 0.45 -0.5
3,187,750 + Psyr_2627 0.51 -0.2
3,188,123 + Psyr_2627 0.82 -0.5
3,188,123 + Psyr_2627 0.82 -0.4
3,188,123 + Psyr_2627 0.82 -1.2

Or see this region's nucleotide sequence