Strain Fitness in Pseudomonas syringae pv. syringae B728a around Psyr_1759

Experiment: KB with Nalidixic 12.5 ug/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPsyr_1758 and Psyr_1759 overlap by 4 nucleotidesPsyr_1759 and Psyr_1760 are separated by 137 nucleotides Psyr_1758: Psyr_1758 - extracellular solute-binding protein, family 5, at 1,997,504 to 1,999,360 _1758 Psyr_1759: Psyr_1759 - extracellular solute-binding protein, family 5, at 1,999,357 to 2,001,186 _1759 Psyr_1760: Psyr_1760 - Peptidoglycan-binding LysM:SLT:MLTD_N, at 2,001,324 to 2,002,928 _1760 Position (kb) 1999 2000 2001 2002Strain fitness (log2 ratio) -2 -1 0 1 2at 1998.582 kb on + strand, within Psyr_1758at 1998.585 kb on + strand, within Psyr_1758at 1998.585 kb on + strand, within Psyr_1758at 1998.585 kb on + strand, within Psyr_1758at 1998.586 kb on - strand, within Psyr_1758at 1998.599 kb on + strand, within Psyr_1758at 1998.599 kb on + strand, within Psyr_1758at 1998.599 kb on + strand, within Psyr_1758at 1998.600 kb on - strand, within Psyr_1758at 1998.600 kb on - strand, within Psyr_1758at 1998.612 kb on + strand, within Psyr_1758at 1998.613 kb on - strand, within Psyr_1758at 1998.613 kb on - strand, within Psyr_1758at 1998.613 kb on - strand, within Psyr_1758at 1998.666 kb on + strand, within Psyr_1758at 1998.667 kb on - strand, within Psyr_1758at 1998.667 kb on - strand, within Psyr_1758at 1998.690 kb on - strand, within Psyr_1758at 1998.705 kb on + strand, within Psyr_1758at 1998.706 kb on - strand, within Psyr_1758at 1998.885 kb on + strand, within Psyr_1758at 1998.885 kb on + strand, within Psyr_1758at 1998.885 kb on + strand, within Psyr_1758at 1998.886 kb on - strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.897 kb on + strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.898 kb on - strand, within Psyr_1758at 1998.997 kb on - strand, within Psyr_1758at 1998.997 kb on - strand, within Psyr_1758at 1999.098 kb on + strand, within Psyr_1758at 1999.407 kb on + strandat 1999.409 kb on + strandat 1999.419 kb on + strandat 1999.487 kb on + strandat 1999.487 kb on + strandat 1999.504 kb on + strandat 1999.607 kb on + strand, within Psyr_1759at 1999.649 kb on + strand, within Psyr_1759at 1999.736 kb on + strand, within Psyr_1759at 1999.736 kb on + strand, within Psyr_1759at 1999.736 kb on + strand, within Psyr_1759at 1999.737 kb on - strand, within Psyr_1759at 1999.737 kb on - strand, within Psyr_1759at 1999.737 kb on - strand, within Psyr_1759at 1999.799 kb on + strand, within Psyr_1759at 1999.800 kb on - strand, within Psyr_1759at 1999.800 kb on - strand, within Psyr_1759at 2000.087 kb on + strand, within Psyr_1759at 2000.087 kb on + strand, within Psyr_1759at 2000.087 kb on + strand, within Psyr_1759at 2000.087 kb on + strand, within Psyr_1759at 2000.088 kb on - strand, within Psyr_1759at 2000.088 kb on - strand, within Psyr_1759at 2000.291 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.327 kb on + strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.328 kb on - strand, within Psyr_1759at 2000.381 kb on + strand, within Psyr_1759at 2000.412 kb on - strand, within Psyr_1759at 2000.886 kb on - strand, within Psyr_1759at 2000.934 kb on - strand, within Psyr_1759at 2001.181 kb on + strandat 2001.181 kb on + strandat 2001.182 kb on - strandat 2001.436 kb on + strandat 2001.436 kb on + strandat 2001.436 kb on + strandat 2001.437 kb on - strandat 2001.437 kb on - strandat 2001.437 kb on - strandat 2001.463 kb on + strandat 2001.463 kb on + strandat 2001.463 kb on + strandat 2001.464 kb on - strandat 2001.464 kb on - strandat 2001.676 kb on + strand, within Psyr_1760at 2001.676 kb on + strand, within Psyr_1760at 2001.676 kb on + strand, within Psyr_1760at 2001.677 kb on - strand, within Psyr_1760at 2001.677 kb on - strand, within Psyr_1760at 2002.003 kb on + strand, within Psyr_1760at 2002.004 kb on - strand, within Psyr_1760at 2002.103 kb on - strand, within Psyr_1760at 2002.103 kb on - strand, within Psyr_1760at 2002.103 kb on - strand, within Psyr_1760at 2002.103 kb on - strand, within Psyr_1760at 2002.138 kb on + strand, within Psyr_1760at 2002.138 kb on + strand, within Psyr_1760at 2002.138 kb on + strand, within Psyr_1760at 2002.155 kb on + strand, within Psyr_1760at 2002.155 kb on + strand, within Psyr_1760at 2002.155 kb on + strand, within Psyr_1760at 2002.155 kb on + strand, within Psyr_1760at 2002.155 kb on + strand, within Psyr_1760at 2002.155 kb on + strand, within Psyr_1760at 2002.156 kb on - strand, within Psyr_1760at 2002.156 kb on - strand, within Psyr_1760at 2002.156 kb on - strand, within Psyr_1760at 2002.156 kb on - strand, within Psyr_1760at 2002.156 kb on - strand, within Psyr_1760at 2002.156 kb on - strand, within Psyr_1760

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Per-strain Table

Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml
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1,998,582 + Psyr_1758 0.58 -1.0
1,998,585 + Psyr_1758 0.58 -1.9
1,998,585 + Psyr_1758 0.58 -0.1
1,998,585 + Psyr_1758 0.58 -1.0
1,998,586 - Psyr_1758 0.58 -2.0
1,998,599 + Psyr_1758 0.59 +0.2
1,998,599 + Psyr_1758 0.59 -0.5
1,998,599 + Psyr_1758 0.59 +0.8
1,998,600 - Psyr_1758 0.59 -2.7
1,998,600 - Psyr_1758 0.59 +0.2
1,998,612 + Psyr_1758 0.60 -0.4
1,998,613 - Psyr_1758 0.60 -2.2
1,998,613 - Psyr_1758 0.60 -1.2
1,998,613 - Psyr_1758 0.60 -1.2
1,998,666 + Psyr_1758 0.63 -2.4
1,998,667 - Psyr_1758 0.63 -0.6
1,998,667 - Psyr_1758 0.63 -0.4
1,998,690 - Psyr_1758 0.64 -1.5
1,998,705 + Psyr_1758 0.65 -1.4
1,998,706 - Psyr_1758 0.65 -2.4
1,998,885 + Psyr_1758 0.74 -1.3
1,998,885 + Psyr_1758 0.74 +0.2
1,998,885 + Psyr_1758 0.74 +0.5
1,998,886 - Psyr_1758 0.74 -0.1
1,998,897 + Psyr_1758 0.75 -0.5
1,998,897 + Psyr_1758 0.75 -1.3
1,998,897 + Psyr_1758 0.75 -0.8
1,998,897 + Psyr_1758 0.75 +0.5
1,998,897 + Psyr_1758 0.75 -1.0
1,998,897 + Psyr_1758 0.75 -0.7
1,998,897 + Psyr_1758 0.75 +1.6
1,998,897 + Psyr_1758 0.75 -0.4
1,998,898 - Psyr_1758 0.75 -1.8
1,998,898 - Psyr_1758 0.75 -0.4
1,998,898 - Psyr_1758 0.75 -0.6
1,998,898 - Psyr_1758 0.75 -1.0
1,998,898 - Psyr_1758 0.75 -0.4
1,998,898 - Psyr_1758 0.75 -0.8
1,998,898 - Psyr_1758 0.75 -1.2
1,998,898 - Psyr_1758 0.75 -1.2
1,998,898 - Psyr_1758 0.75 -1.4
1,998,997 - Psyr_1758 0.80 +0.6
1,998,997 - Psyr_1758 0.80 +0.4
1,999,098 + Psyr_1758 0.86 -1.5
1,999,407 + +2.2
1,999,409 + -1.4
1,999,419 + -0.0
1,999,487 + -0.0
1,999,487 + +1.6
1,999,504 + -0.8
1,999,607 + Psyr_1759 0.14 -0.7
1,999,649 + Psyr_1759 0.16 -1.8
1,999,736 + Psyr_1759 0.21 -0.2
1,999,736 + Psyr_1759 0.21 -0.2
1,999,736 + Psyr_1759 0.21 -0.8
1,999,737 - Psyr_1759 0.21 +0.6
1,999,737 - Psyr_1759 0.21 -0.6
1,999,737 - Psyr_1759 0.21 +0.2
1,999,799 + Psyr_1759 0.24 -1.8
1,999,800 - Psyr_1759 0.24 -1.8
1,999,800 - Psyr_1759 0.24 +0.5
2,000,087 + Psyr_1759 0.40 -1.2
2,000,087 + Psyr_1759 0.40 +0.4
2,000,087 + Psyr_1759 0.40 -1.0
2,000,087 + Psyr_1759 0.40 -0.8
2,000,088 - Psyr_1759 0.40 -2.4
2,000,088 - Psyr_1759 0.40 +0.5
2,000,291 + Psyr_1759 0.51 -1.2
2,000,327 + Psyr_1759 0.53 +1.2
2,000,327 + Psyr_1759 0.53 -2.0
2,000,327 + Psyr_1759 0.53 -0.2
2,000,327 + Psyr_1759 0.53 -2.2
2,000,327 + Psyr_1759 0.53 +0.3
2,000,327 + Psyr_1759 0.53 -0.3
2,000,327 + Psyr_1759 0.53 -1.1
2,000,327 + Psyr_1759 0.53 -0.4
2,000,327 + Psyr_1759 0.53 +0.2
2,000,327 + Psyr_1759 0.53 -1.8
2,000,328 - Psyr_1759 0.53 -1.8
2,000,328 - Psyr_1759 0.53 -1.3
2,000,328 - Psyr_1759 0.53 +0.1
2,000,328 - Psyr_1759 0.53 -1.8
2,000,328 - Psyr_1759 0.53 -1.1
2,000,328 - Psyr_1759 0.53 +0.8
2,000,328 - Psyr_1759 0.53 +0.9
2,000,328 - Psyr_1759 0.53 +0.4
2,000,381 + Psyr_1759 0.56 +0.3
2,000,412 - Psyr_1759 0.58 +0.5
2,000,886 - Psyr_1759 0.84 -0.8
2,000,934 - Psyr_1759 0.86 +0.3
2,001,181 + +0.2
2,001,181 + +1.2
2,001,182 - -1.4
2,001,436 + -0.6
2,001,436 + -1.1
2,001,436 + -0.4
2,001,437 - +0.7
2,001,437 - +1.9
2,001,437 - +0.4
2,001,463 + +0.2
2,001,463 + -1.2
2,001,463 + +0.7
2,001,464 - +1.3
2,001,464 - +0.3
2,001,676 + Psyr_1760 0.22 -0.3
2,001,676 + Psyr_1760 0.22 +1.2
2,001,676 + Psyr_1760 0.22 -0.1
2,001,677 - Psyr_1760 0.22 +0.7
2,001,677 - Psyr_1760 0.22 +1.9
2,002,003 + Psyr_1760 0.42 +2.2
2,002,004 - Psyr_1760 0.42 +2.6
2,002,103 - Psyr_1760 0.49 +0.5
2,002,103 - Psyr_1760 0.49 -1.4
2,002,103 - Psyr_1760 0.49 +2.0
2,002,103 - Psyr_1760 0.49 -0.4
2,002,138 + Psyr_1760 0.51 -0.7
2,002,138 + Psyr_1760 0.51 +2.0
2,002,138 + Psyr_1760 0.51 -1.5
2,002,155 + Psyr_1760 0.52 +0.6
2,002,155 + Psyr_1760 0.52 +0.3
2,002,155 + Psyr_1760 0.52 +0.2
2,002,155 + Psyr_1760 0.52 +0.0
2,002,155 + Psyr_1760 0.52 +2.5
2,002,155 + Psyr_1760 0.52 -0.2
2,002,156 - Psyr_1760 0.52 -0.1
2,002,156 - Psyr_1760 0.52 -1.5
2,002,156 - Psyr_1760 0.52 +1.9
2,002,156 - Psyr_1760 0.52 -0.5
2,002,156 - Psyr_1760 0.52 -2.2
2,002,156 - Psyr_1760 0.52 -0.6

Or see this region's nucleotide sequence