Experiment: KB with Nalidixic 12.5 ug/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Psyr_0161 and Psyr_0162 are separated by 441 nucleotides Psyr_0162 and Psyr_0163 are separated by 130 nucleotides Psyr_0163 and Psyr_0164 are separated by 9 nucleotides
Psyr_0161: Psyr_0161 - Protein of unknown function DUF861, at 175,914 to 176,627
_0161
Psyr_0162: Psyr_0162 - hypothetical protein, at 177,069 to 177,518
_0162
Psyr_0163: Psyr_0163 - conserved hypothetical protein, at 177,649 to 178,356
_0163
Psyr_0164: Psyr_0164 - conserved hypothetical protein, at 178,366 to 179,082
_0164
Position (kb) 177
178 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 176.097 kb on + strand, within Psyr_0161 at 176.104 kb on - strand, within Psyr_0161 at 176.104 kb on - strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.212 kb on + strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.213 kb on - strand, within Psyr_0161 at 176.216 kb on + strand, within Psyr_0161 at 176.217 kb on - strand, within Psyr_0161 at 176.217 kb on - strand, within Psyr_0161 at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.598 kb on + strand at 176.599 kb on - strand at 176.599 kb on - strand at 176.614 kb on - strand at 176.614 kb on - strand at 176.636 kb on + strand at 176.683 kb on + strand at 176.683 kb on + strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.684 kb on - strand at 176.721 kb on - strand at 176.802 kb on - strand at 176.873 kb on + strand at 176.906 kb on + strand at 176.906 kb on + strand at 176.907 kb on - strand at 176.907 kb on - strand at 176.907 kb on - strand at 176.907 kb on - strand at 176.946 kb on + strand at 176.946 kb on + strand at 176.946 kb on + strand at 176.946 kb on + strand at 176.947 kb on - strand at 176.947 kb on - strand at 176.947 kb on - strand at 176.947 kb on - strand at 176.988 kb on + strand at 177.046 kb on - strand at 177.049 kb on + strand at 177.194 kb on + strand, within Psyr_0162 at 177.194 kb on + strand, within Psyr_0162 at 177.194 kb on + strand, within Psyr_0162 at 177.194 kb on + strand, within Psyr_0162 at 177.194 kb on + strand, within Psyr_0162 at 177.194 kb on + strand, within Psyr_0162 at 177.195 kb on - strand, within Psyr_0162 at 177.195 kb on - strand, within Psyr_0162 at 177.282 kb on + strand, within Psyr_0162 at 177.282 kb on + strand, within Psyr_0162 at 177.283 kb on - strand, within Psyr_0162 at 177.283 kb on - strand, within Psyr_0162 at 177.283 kb on - strand, within Psyr_0162 at 177.284 kb on + strand, within Psyr_0162 at 177.285 kb on - strand, within Psyr_0162 at 177.285 kb on - strand, within Psyr_0162 at 177.318 kb on + strand, within Psyr_0162 at 177.318 kb on + strand, within Psyr_0162 at 177.319 kb on - strand, within Psyr_0162 at 177.334 kb on - strand, within Psyr_0162 at 177.334 kb on - strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.352 kb on + strand, within Psyr_0162 at 177.353 kb on - strand, within Psyr_0162 at 177.353 kb on - strand, within Psyr_0162 at 177.353 kb on - strand, within Psyr_0162 at 177.353 kb on - strand, within Psyr_0162 at 177.353 kb on - strand, within Psyr_0162 at 177.377 kb on - strand, within Psyr_0162 at 177.377 kb on - strand, within Psyr_0162 at 177.422 kb on + strand, within Psyr_0162 at 177.458 kb on + strand, within Psyr_0162 at 177.458 kb on + strand, within Psyr_0162 at 177.458 kb on + strand, within Psyr_0162 at 177.459 kb on - strand, within Psyr_0162 at 177.459 kb on - strand, within Psyr_0162 at 177.459 kb on - strand, within Psyr_0162 at 177.459 kb on - strand, within Psyr_0162 at 177.459 kb on - strand, within Psyr_0162 at 177.483 kb on - strand at 177.516 kb on + strand at 177.516 kb on + strand at 177.537 kb on - strand at 177.544 kb on + strand at 177.545 kb on - strand at 177.573 kb on + strand at 177.573 kb on + strand at 177.574 kb on - strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.599 kb on + strand at 177.600 kb on - strand at 177.600 kb on - strand at 177.600 kb on - strand at 177.600 kb on - strand at 177.600 kb on - strand at 177.600 kb on - strand at 177.604 kb on - strand at 177.610 kb on + strand at 177.610 kb on + strand at 177.611 kb on - strand at 177.611 kb on - strand at 177.678 kb on + strand at 177.678 kb on + strand at 177.678 kb on + strand at 177.679 kb on - strand at 177.696 kb on - strand at 177.743 kb on + strand, within Psyr_0163 at 177.743 kb on + strand, within Psyr_0163 at 177.743 kb on + strand, within Psyr_0163 at 177.744 kb on - strand, within Psyr_0163 at 177.744 kb on - strand, within Psyr_0163 at 177.744 kb on - strand, within Psyr_0163 at 177.744 kb on - strand, within Psyr_0163 at 177.747 kb on + strand, within Psyr_0163 at 177.747 kb on + strand, within Psyr_0163 at 177.747 kb on + strand, within Psyr_0163 at 177.747 kb on + strand, within Psyr_0163 at 177.747 kb on + strand, within Psyr_0163 at 177.748 kb on - strand, within Psyr_0163 at 177.748 kb on - strand, within Psyr_0163 at 177.748 kb on - strand, within Psyr_0163 at 177.748 kb on - strand, within Psyr_0163 at 177.748 kb on - strand, within Psyr_0163 at 177.775 kb on - strand, within Psyr_0163 at 177.840 kb on + strand, within Psyr_0163 at 177.848 kb on + strand, within Psyr_0163 at 177.910 kb on + strand, within Psyr_0163 at 177.910 kb on + strand, within Psyr_0163 at 177.910 kb on + strand, within Psyr_0163 at 177.910 kb on + strand, within Psyr_0163 at 177.910 kb on + strand, within Psyr_0163 at 177.911 kb on - strand, within Psyr_0163 at 177.911 kb on - strand, within Psyr_0163 at 177.911 kb on - strand, within Psyr_0163 at 177.911 kb on - strand, within Psyr_0163 at 177.911 kb on - strand, within Psyr_0163 at 177.913 kb on + strand, within Psyr_0163 at 178.063 kb on + strand, within Psyr_0163 at 178.063 kb on + strand, within Psyr_0163 at 178.063 kb on + strand, within Psyr_0163 at 178.063 kb on + strand, within Psyr_0163 at 178.063 kb on + strand, within Psyr_0163 at 178.063 kb on + strand, within Psyr_0163 at 178.064 kb on - strand, within Psyr_0163 at 178.064 kb on - strand, within Psyr_0163 at 178.064 kb on - strand, within Psyr_0163 at 178.064 kb on - strand, within Psyr_0163 at 178.064 kb on - strand, within Psyr_0163 at 178.089 kb on + strand, within Psyr_0163 at 178.099 kb on - strand, within Psyr_0163 at 178.099 kb on - strand, within Psyr_0163 at 178.143 kb on + strand, within Psyr_0163 at 178.162 kb on + strand, within Psyr_0163 at 178.162 kb on + strand, within Psyr_0163 at 178.163 kb on - strand, within Psyr_0163 at 178.163 kb on - strand, within Psyr_0163 at 178.163 kb on - strand, within Psyr_0163 at 178.174 kb on + strand, within Psyr_0163 at 178.175 kb on - strand, within Psyr_0163 at 178.271 kb on - strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.284 kb on + strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.285 kb on - strand, within Psyr_0163 at 178.365 kb on + strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.365 kb on + strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.366 kb on - strand at 178.380 kb on + strand at 178.380 kb on + strand at 178.381 kb on - strand at 178.381 kb on - strand at 178.381 kb on - strand at 178.381 kb on - strand at 178.475 kb on + strand, within Psyr_0164 at 178.475 kb on + strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164 at 178.476 kb on - strand, within Psyr_0164
Per-strain Table
Position Strand Gene LocusTag Fraction KB with Nalidixic 12.5 ug/ml remove 176,097 + Psyr_0161 0.26 -0.6 176,104 - Psyr_0161 0.27 -0.8 176,104 - Psyr_0161 0.27 +0.5 176,212 + Psyr_0161 0.42 +0.3 176,212 + Psyr_0161 0.42 -0.0 176,212 + Psyr_0161 0.42 +0.1 176,212 + Psyr_0161 0.42 +1.2 176,212 + Psyr_0161 0.42 -0.5 176,212 + Psyr_0161 0.42 -1.6 176,212 + Psyr_0161 0.42 +0.6 176,212 + Psyr_0161 0.42 +0.3 176,212 + Psyr_0161 0.42 -0.9 176,212 + Psyr_0161 0.42 -0.7 176,212 + Psyr_0161 0.42 +0.6 176,212 + Psyr_0161 0.42 -0.9 176,212 + Psyr_0161 0.42 +1.4 176,213 - Psyr_0161 0.42 +0.4 176,213 - Psyr_0161 0.42 -0.1 176,213 - Psyr_0161 0.42 -1.5 176,213 - Psyr_0161 0.42 +0.6 176,213 - Psyr_0161 0.42 +0.2 176,213 - Psyr_0161 0.42 -0.8 176,216 + Psyr_0161 0.42 -2.0 176,217 - Psyr_0161 0.42 -0.4 176,217 - Psyr_0161 0.42 +0.6 176,598 + +0.1 176,598 + +0.6 176,598 + -0.8 176,598 + +0.6 176,598 + +0.3 176,598 + -0.2 176,598 + +1.7 176,599 - +0.6 176,599 - +1.1 176,614 - -0.3 176,614 - +0.0 176,636 + -0.0 176,683 + -2.4 176,683 + +0.6 176,684 - -0.6 176,684 - +0.8 176,684 - -1.3 176,721 - -1.0 176,802 - -0.1 176,873 + -1.8 176,906 + -1.8 176,906 + -0.0 176,907 - +0.2 176,907 - -0.2 176,907 - +0.1 176,907 - -1.8 176,946 + -1.5 176,946 + +1.6 176,946 + -0.2 176,946 + -0.6 176,947 - -0.8 176,947 - +0.1 176,947 - -0.1 176,947 - +1.2 176,988 + -1.9 177,046 - -0.8 177,049 + -0.2 177,194 + Psyr_0162 0.28 -0.4 177,194 + Psyr_0162 0.28 -0.2 177,194 + Psyr_0162 0.28 -0.8 177,194 + Psyr_0162 0.28 -0.3 177,194 + Psyr_0162 0.28 +0.2 177,194 + Psyr_0162 0.28 -0.5 177,195 - Psyr_0162 0.28 -1.1 177,195 - Psyr_0162 0.28 -0.3 177,282 + Psyr_0162 0.47 +0.6 177,282 + Psyr_0162 0.47 -0.7 177,283 - Psyr_0162 0.48 -1.8 177,283 - Psyr_0162 0.48 +0.6 177,283 - Psyr_0162 0.48 +0.1 177,284 + Psyr_0162 0.48 +0.6 177,285 - Psyr_0162 0.48 -1.5 177,285 - Psyr_0162 0.48 +0.3 177,318 + Psyr_0162 0.55 -0.5 177,318 + Psyr_0162 0.55 +0.6 177,319 - Psyr_0162 0.56 -1.2 177,334 - Psyr_0162 0.59 +0.6 177,334 - Psyr_0162 0.59 -1.3 177,352 + Psyr_0162 0.63 +0.2 177,352 + Psyr_0162 0.63 -0.8 177,352 + Psyr_0162 0.63 -0.1 177,352 + Psyr_0162 0.63 -0.7 177,352 + Psyr_0162 0.63 -0.8 177,352 + Psyr_0162 0.63 -0.4 177,352 + Psyr_0162 0.63 -0.1 177,352 + Psyr_0162 0.63 -0.8 177,352 + Psyr_0162 0.63 +0.6 177,352 + Psyr_0162 0.63 +0.2 177,352 + Psyr_0162 0.63 -0.2 177,352 + Psyr_0162 0.63 -0.2 177,353 - Psyr_0162 0.63 -1.8 177,353 - Psyr_0162 0.63 -0.6 177,353 - Psyr_0162 0.63 -0.4 177,353 - Psyr_0162 0.63 -1.2 177,353 - Psyr_0162 0.63 -1.4 177,377 - Psyr_0162 0.68 -1.0 177,377 - Psyr_0162 0.68 -1.0 177,422 + Psyr_0162 0.78 -0.3 177,458 + Psyr_0162 0.86 +0.2 177,458 + Psyr_0162 0.86 -0.6 177,458 + Psyr_0162 0.86 -0.1 177,459 - Psyr_0162 0.87 +0.1 177,459 - Psyr_0162 0.87 -0.8 177,459 - Psyr_0162 0.87 -1.4 177,459 - Psyr_0162 0.87 +0.6 177,459 - Psyr_0162 0.87 +0.6 177,483 - +1.0 177,516 + -0.1 177,516 + -0.5 177,537 - -0.8 177,544 + +0.3 177,545 - -0.4 177,573 + -0.2 177,573 + -0.8 177,574 - -0.4 177,599 + -0.4 177,599 + +0.9 177,599 + -0.1 177,599 + -0.4 177,599 + -2.2 177,599 + -0.2 177,599 + -0.6 177,599 + +0.6 177,599 + -0.4 177,599 + +0.9 177,600 - +0.2 177,600 - -0.2 177,600 - +1.6 177,600 - +0.1 177,600 - -0.1 177,600 - +1.2 177,604 - -0.3 177,610 + -0.4 177,610 + +0.5 177,611 - -0.0 177,611 - -0.1 177,678 + +1.0 177,678 + -0.8 177,678 + -0.3 177,679 - +0.6 177,696 - -0.6 177,743 + Psyr_0163 0.13 -0.3 177,743 + Psyr_0163 0.13 -1.0 177,743 + Psyr_0163 0.13 -0.3 177,744 - Psyr_0163 0.13 -1.1 177,744 - Psyr_0163 0.13 +0.4 177,744 - Psyr_0163 0.13 +0.1 177,744 - Psyr_0163 0.13 -0.8 177,747 + Psyr_0163 0.14 +0.1 177,747 + Psyr_0163 0.14 -0.3 177,747 + Psyr_0163 0.14 -1.5 177,747 + Psyr_0163 0.14 -0.1 177,747 + Psyr_0163 0.14 -2.0 177,748 - Psyr_0163 0.14 +0.7 177,748 - Psyr_0163 0.14 +0.1 177,748 - Psyr_0163 0.14 +0.9 177,748 - Psyr_0163 0.14 +1.6 177,748 - Psyr_0163 0.14 -1.2 177,775 - Psyr_0163 0.18 +0.0 177,840 + Psyr_0163 0.27 +0.1 177,848 + Psyr_0163 0.28 -0.3 177,910 + Psyr_0163 0.37 -1.8 177,910 + Psyr_0163 0.37 -0.6 177,910 + Psyr_0163 0.37 +0.8 177,910 + Psyr_0163 0.37 -1.5 177,910 + Psyr_0163 0.37 -0.9 177,911 - Psyr_0163 0.37 -0.6 177,911 - Psyr_0163 0.37 -0.3 177,911 - Psyr_0163 0.37 -0.9 177,911 - Psyr_0163 0.37 -0.2 177,911 - Psyr_0163 0.37 -0.4 177,913 + Psyr_0163 0.37 -0.0 178,063 + Psyr_0163 0.58 -1.8 178,063 + Psyr_0163 0.58 -0.2 178,063 + Psyr_0163 0.58 -1.4 178,063 + Psyr_0163 0.58 +1.8 178,063 + Psyr_0163 0.58 +0.7 178,063 + Psyr_0163 0.58 -0.9 178,064 - Psyr_0163 0.59 -0.2 178,064 - Psyr_0163 0.59 +0.7 178,064 - Psyr_0163 0.59 -0.5 178,064 - Psyr_0163 0.59 -0.4 178,064 - Psyr_0163 0.59 -1.9 178,089 + Psyr_0163 0.62 -1.3 178,099 - Psyr_0163 0.64 -0.3 178,099 - Psyr_0163 0.64 +0.4 178,143 + Psyr_0163 0.70 -0.4 178,162 + Psyr_0163 0.72 -0.8 178,162 + Psyr_0163 0.72 +2.2 178,163 - Psyr_0163 0.73 -2.0 178,163 - Psyr_0163 0.73 -0.7 178,163 - Psyr_0163 0.73 -0.4 178,174 + Psyr_0163 0.74 -0.2 178,175 - Psyr_0163 0.74 -0.2 178,271 - Psyr_0163 0.88 -0.4 178,284 + Psyr_0163 0.90 +1.8 178,284 + Psyr_0163 0.90 -0.0 178,284 + Psyr_0163 0.90 -0.7 178,284 + Psyr_0163 0.90 -0.4 178,284 + Psyr_0163 0.90 +0.9 178,284 + Psyr_0163 0.90 -0.5 178,284 + Psyr_0163 0.90 -1.1 178,284 + Psyr_0163 0.90 +0.6 178,285 - Psyr_0163 0.90 +0.3 178,285 - Psyr_0163 0.90 -0.5 178,285 - Psyr_0163 0.90 -1.0 178,285 - Psyr_0163 0.90 +0.5 178,285 - Psyr_0163 0.90 +0.7 178,285 - Psyr_0163 0.90 -0.4 178,285 - Psyr_0163 0.90 +0.6 178,285 - Psyr_0163 0.90 -0.0 178,285 - Psyr_0163 0.90 -0.9 178,285 - Psyr_0163 0.90 -1.4 178,285 - Psyr_0163 0.90 -0.1 178,285 - Psyr_0163 0.90 -2.0 178,285 - Psyr_0163 0.90 +1.0 178,365 + +0.3 178,365 + -0.4 178,365 + -0.6 178,365 + +3.1 178,365 + -0.9 178,365 + -0.3 178,366 - -1.4 178,366 - -0.5 178,366 - +0.2 178,366 - +0.9 178,366 - +0.6 178,366 - -0.6 178,366 - -0.1 178,366 - +0.3 178,366 - -0.5 178,366 - -0.9 178,366 - +1.6 178,366 - -1.4 178,380 + +0.3 178,380 + -0.7 178,381 - +0.3 178,381 - -0.0 178,381 - -1.8 178,381 - -1.0 178,475 + Psyr_0164 0.15 -0.0 178,475 + Psyr_0164 0.15 -0.6 178,476 - Psyr_0164 0.15 -0.4 178,476 - Psyr_0164 0.15 +1.0 178,476 - Psyr_0164 0.15 +0.1 178,476 - Psyr_0164 0.15 -0.7 178,476 - Psyr_0164 0.15 -0.6
Or see this region's nucleotide sequence