Experiment: D-Sorbitol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS21285 and ABID97_RS21290 are separated by 6 nucleotides ABID97_RS21290 and ABID97_RS21295 are separated by 2 nucleotides ABID97_RS21295 and ABID97_RS21300 overlap by 10 nucleotides
ABID97_RS21285: ABID97_RS21285 - acyltransferase, at 4,393,181 to 4,394,242
_RS21285
ABID97_RS21290: ABID97_RS21290 - haloacid dehalogenase type II, at 4,394,249 to 4,394,977
_RS21290
ABID97_RS21295: ABID97_RS21295 - bifunctional 4-hydroxy-2-oxoglutarate aldolase/2-dehydro-3-deoxy-phosphogluconate aldolase, at 4,394,980 to 4,395,624
_RS21295
ABID97_RS21300: ABID97_RS21300 - phosphogluconate dehydratase, at 4,395,615 to 4,397,441
_RS21300
Position (kb) 4394
4395 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 4394.365 kb on - strand, within ABID97_RS21290 at 4394.472 kb on + strand, within ABID97_RS21290 at 4394.472 kb on + strand, within ABID97_RS21290 at 4394.472 kb on + strand, within ABID97_RS21290 at 4394.473 kb on - strand, within ABID97_RS21290 at 4394.473 kb on - strand, within ABID97_RS21290 at 4394.493 kb on + strand, within ABID97_RS21290 at 4394.493 kb on + strand, within ABID97_RS21290 at 4395.616 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Sorbitol (C) remove 4,394,365 - ABID97_RS21290 0.16 -0.3 4,394,472 + ABID97_RS21290 0.31 +0.5 4,394,472 + ABID97_RS21290 0.31 -0.1 4,394,472 + ABID97_RS21290 0.31 +0.3 4,394,473 - ABID97_RS21290 0.31 -0.4 4,394,473 - ABID97_RS21290 0.31 -1.5 4,394,493 + ABID97_RS21290 0.33 +0.2 4,394,493 + ABID97_RS21290 0.33 +0.3 4,395,616 + -4.5
Or see this region's nucleotide sequence