Strain Fitness in Cupriavidus basilensis FW507-4G11 around RR42_RS13065

Experiment: R2A with Doxycycline hyclate 0.0001 mg/ml

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	R2A with Doxycycline hyclate 0.0001 mg/ml
2,813,090	+				-0.4
2,813,090	+				+0.9
2,813,090	+				+0.3
2,813,091	-				+1.3
2,813,091	-				+2.7
2,813,091	-				-0.4
2,813,091	-				+1.9
2,813,091	-				+1.7
2,813,091	-				+0.1
2,813,146	+				+0.7
2,813,147	-				-0.9
2,813,208	+				+0.4
2,813,209	-				-0.8
2,813,209	-				+0.4
2,813,367	+		RR42_RS13060	0.26	-1.3
2,813,367	+		RR42_RS13060	0.26	-1.3
2,813,367	+		RR42_RS13060	0.26	+0.9
2,813,367	+		RR42_RS13060	0.26	-0.2
2,813,367	+		RR42_RS13060	0.26	-2.2
2,813,368	-		RR42_RS13060	0.26	+0.6
2,813,464	-		RR42_RS13060	0.39	-0.1
2,813,831	+		RR42_RS13060	0.88	+1.6
2,813,831	+		RR42_RS13060	0.88	-0.7
2,813,831	+		RR42_RS13060	0.88	-0.5
2,813,832	-		RR42_RS13060	0.88	+0.6
2,813,835	+		RR42_RS13060	0.89	+0.9
2,813,836	-		RR42_RS13060	0.89	+0.6
2,813,836	-		RR42_RS13060	0.89	+0.7
2,813,836	-		RR42_RS13060	0.89	+1.1
2,813,836	-		RR42_RS13060	0.89	-1.2
2,813,911	+				+0.1
2,813,928	+				+1.4
2,813,928	+				-0.7
2,813,928	+				+0.0
2,813,929	-				-0.3
2,813,929	-				-0.4
2,813,929	-				+0.9
2,814,541	+		RR42_RS13065	0.21	+1.3
2,814,542	-		RR42_RS13065	0.21	-0.4
2,814,602	-		RR42_RS13065	0.23	-0.9
2,814,631	+		RR42_RS13065	0.24	-0.1
2,814,632	-		RR42_RS13065	0.24	-2.0
2,814,847	+		RR42_RS13065	0.32	-2.3
2,814,848	-		RR42_RS13065	0.32	-2.5
2,814,854	+		RR42_RS13065	0.33	-0.7
2,814,931	+		RR42_RS13065	0.36	-1.7
2,814,931	+		RR42_RS13065	0.36	-2.3
2,814,932	-		RR42_RS13065	0.36	-1.1
2,814,932	-		RR42_RS13065	0.36	-1.4
2,814,940	+		RR42_RS13065	0.36	-1.3
2,815,020	-		RR42_RS13065	0.39	-0.8
2,815,172	-		RR42_RS13065	0.45	-4.2
2,815,315	+		RR42_RS13065	0.51	-1.9
2,815,316	-		RR42_RS13065	0.51	-3.7
2,815,473	-		RR42_RS13065	0.57	-2.4
2,815,474	+		RR42_RS13065	0.57	-2.2
2,815,475	-		RR42_RS13065	0.57	-1.4
2,815,475	-		RR42_RS13065	0.57	-1.9
2,815,475	-		RR42_RS13065	0.57	-4.3
2,815,475	-		RR42_RS13065	0.57	-1.4
2,815,475	-		RR42_RS13065	0.57	-3.0
2,815,651	+		RR42_RS13065	0.63	-1.4
2,815,652	-		RR42_RS13065	0.64	-2.8
2,815,708	+		RR42_RS13065	0.66	-2.1
2,815,708	+		RR42_RS13065	0.66	-2.6
2,815,709	-		RR42_RS13065	0.66	-0.6
2,815,709	-		RR42_RS13065	0.66	+0.3
2,815,781	-		RR42_RS13065	0.68	-0.7
2,815,940	-		RR42_RS13065	0.75	-3.4
2,815,940	-		RR42_RS13065	0.75	-1.2
2,816,023	+		RR42_RS13065	0.78	-2.1
2,816,180	-		RR42_RS13065	0.84	-3.1
2,816,581	+				-3.6
2,816,585	+				-0.7
2,816,585	+				-2.2
2,816,586	-				-0.7
2,816,636	+				-0.1
2,816,637	-				-1.3
2,816,637	-				+0.1
2,816,864	+				-1.4
2,816,880	-				+1.0
2,816,880	-				+0.2
2,817,020	+				-3.3
2,817,021	-				-0.7
2,817,121	+				+0.5
2,817,121	+				+0.5
2,817,122	-				+0.4
2,817,122	-				-1.0
2,817,247	+				-0.1
2,817,248	-				-1.9
2,817,248	-				-1.3
2,817,248	-				+0.9