Experiment: D-Glucose-6-Phosphate (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABIE40_RS22400 and ABIE40_RS22405 are separated by 51 nucleotides ABIE40_RS22405 and ABIE40_RS22410 are separated by 211 nucleotides
ABIE40_RS22400: ABIE40_RS22400 - mannonate dehydratase, at 611,382 to 612,569
_RS22400
ABIE40_RS22405: ABIE40_RS22405 - GntR family transcriptional regulator, at 612,621 to 613,343
_RS22405
ABIE40_RS22410: ABIE40_RS22410 - extracellular solute-binding protein, at 613,555 to 614,730
_RS22410
Position (kb) 612
613
614 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 611.668 kb on + strand, within ABIE40_RS22400 at 611.668 kb on + strand, within ABIE40_RS22400 at 611.668 kb on + strand, within ABIE40_RS22400 at 611.668 kb on + strand, within ABIE40_RS22400 at 611.743 kb on + strand, within ABIE40_RS22400 at 611.743 kb on + strand, within ABIE40_RS22400 at 611.743 kb on + strand, within ABIE40_RS22400 at 611.744 kb on - strand, within ABIE40_RS22400 at 611.744 kb on - strand, within ABIE40_RS22400 at 611.792 kb on - strand, within ABIE40_RS22400 at 611.953 kb on + strand, within ABIE40_RS22400 at 612.106 kb on + strand, within ABIE40_RS22400 at 612.206 kb on - strand, within ABIE40_RS22400 at 612.206 kb on - strand, within ABIE40_RS22400 at 612.206 kb on - strand, within ABIE40_RS22400 at 612.250 kb on + strand, within ABIE40_RS22400 at 612.749 kb on + strand, within ABIE40_RS22405 at 612.749 kb on + strand, within ABIE40_RS22405 at 612.826 kb on - strand, within ABIE40_RS22405 at 612.826 kb on - strand, within ABIE40_RS22405 at 612.974 kb on + strand, within ABIE40_RS22405 at 613.103 kb on + strand, within ABIE40_RS22405 at 613.104 kb on - strand, within ABIE40_RS22405 at 613.237 kb on + strand, within ABIE40_RS22405 at 613.237 kb on + strand, within ABIE40_RS22405 at 613.347 kb on - strand at 613.347 kb on - strand at 613.347 kb on - strand at 613.376 kb on - strand at 613.378 kb on + strand at 613.383 kb on + strand at 613.723 kb on + strand, within ABIE40_RS22410 at 613.723 kb on + strand, within ABIE40_RS22410 at 613.723 kb on + strand, within ABIE40_RS22410 at 613.723 kb on + strand, within ABIE40_RS22410 at 613.724 kb on - strand, within ABIE40_RS22410 at 613.724 kb on - strand, within ABIE40_RS22410 at 613.724 kb on - strand, within ABIE40_RS22410 at 613.999 kb on + strand, within ABIE40_RS22410 at 613.999 kb on + strand, within ABIE40_RS22410 at 613.999 kb on + strand, within ABIE40_RS22410 at 613.999 kb on + strand, within ABIE40_RS22410 at 613.999 kb on + strand, within ABIE40_RS22410 at 613.999 kb on + strand, within ABIE40_RS22410 at 614.000 kb on - strand, within ABIE40_RS22410 at 614.000 kb on - strand, within ABIE40_RS22410 at 614.000 kb on - strand, within ABIE40_RS22410 at 614.000 kb on - strand, within ABIE40_RS22410 at 614.000 kb on - strand, within ABIE40_RS22410 at 614.000 kb on - strand, within ABIE40_RS22410 at 614.026 kb on + strand, within ABIE40_RS22410 at 614.026 kb on + strand, within ABIE40_RS22410 at 614.026 kb on + strand, within ABIE40_RS22410 at 614.027 kb on - strand, within ABIE40_RS22410 at 614.028 kb on + strand, within ABIE40_RS22410 at 614.028 kb on + strand, within ABIE40_RS22410 at 614.028 kb on + strand, within ABIE40_RS22410 at 614.029 kb on - strand, within ABIE40_RS22410 at 614.029 kb on - strand, within ABIE40_RS22410 at 614.111 kb on - strand, within ABIE40_RS22410 at 614.165 kb on - strand, within ABIE40_RS22410 at 614.225 kb on - strand, within ABIE40_RS22410 at 614.225 kb on - strand, within ABIE40_RS22410 at 614.225 kb on - strand, within ABIE40_RS22410 at 614.225 kb on - strand, within ABIE40_RS22410 at 614.225 kb on - strand, within ABIE40_RS22410 at 614.254 kb on + strand, within ABIE40_RS22410 at 614.255 kb on - strand, within ABIE40_RS22410 at 614.255 kb on - strand, within ABIE40_RS22410 at 614.255 kb on - strand, within ABIE40_RS22410 at 614.255 kb on - strand, within ABIE40_RS22410 at 614.257 kb on + strand, within ABIE40_RS22410 at 614.258 kb on - strand, within ABIE40_RS22410 at 614.338 kb on - strand, within ABIE40_RS22410
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C) remove 611,668 + ABIE40_RS22400 0.24 +1.0 611,668 + ABIE40_RS22400 0.24 -2.3 611,668 + ABIE40_RS22400 0.24 -0.1 611,668 + ABIE40_RS22400 0.24 +0.5 611,743 + ABIE40_RS22400 0.30 +1.5 611,743 + ABIE40_RS22400 0.30 -0.0 611,743 + ABIE40_RS22400 0.30 +0.7 611,744 - ABIE40_RS22400 0.30 +0.0 611,744 - ABIE40_RS22400 0.30 -0.9 611,792 - ABIE40_RS22400 0.35 +0.4 611,953 + ABIE40_RS22400 0.48 +0.3 612,106 + ABIE40_RS22400 0.61 +0.4 612,206 - ABIE40_RS22400 0.69 -1.7 612,206 - ABIE40_RS22400 0.69 +0.3 612,206 - ABIE40_RS22400 0.69 +0.3 612,250 + ABIE40_RS22400 0.73 +0.3 612,749 + ABIE40_RS22405 0.18 +3.8 612,749 + ABIE40_RS22405 0.18 +3.3 612,826 - ABIE40_RS22405 0.28 +2.8 612,826 - ABIE40_RS22405 0.28 +4.4 612,974 + ABIE40_RS22405 0.49 +2.2 613,103 + ABIE40_RS22405 0.67 +3.2 613,104 - ABIE40_RS22405 0.67 +2.7 613,237 + ABIE40_RS22405 0.85 +2.0 613,237 + ABIE40_RS22405 0.85 +2.8 613,347 - +2.7 613,347 - +1.9 613,347 - +2.6 613,376 - -3.3 613,378 + -2.7 613,383 + -3.4 613,723 + ABIE40_RS22410 0.14 -4.3 613,723 + ABIE40_RS22410 0.14 -3.9 613,723 + ABIE40_RS22410 0.14 -3.0 613,723 + ABIE40_RS22410 0.14 -0.3 613,724 - ABIE40_RS22410 0.14 -0.6 613,724 - ABIE40_RS22410 0.14 +0.4 613,724 - ABIE40_RS22410 0.14 -4.4 613,999 + ABIE40_RS22410 0.38 -1.8 613,999 + ABIE40_RS22410 0.38 -4.4 613,999 + ABIE40_RS22410 0.38 -3.8 613,999 + ABIE40_RS22410 0.38 -3.6 613,999 + ABIE40_RS22410 0.38 -2.7 613,999 + ABIE40_RS22410 0.38 -5.3 614,000 - ABIE40_RS22410 0.38 -3.3 614,000 - ABIE40_RS22410 0.38 -2.6 614,000 - ABIE40_RS22410 0.38 -1.8 614,000 - ABIE40_RS22410 0.38 -1.7 614,000 - ABIE40_RS22410 0.38 -0.6 614,000 - ABIE40_RS22410 0.38 -2.8 614,026 + ABIE40_RS22410 0.40 -3.0 614,026 + ABIE40_RS22410 0.40 -0.9 614,026 + ABIE40_RS22410 0.40 -0.8 614,027 - ABIE40_RS22410 0.40 -4.0 614,028 + ABIE40_RS22410 0.40 -4.4 614,028 + ABIE40_RS22410 0.40 -4.3 614,028 + ABIE40_RS22410 0.40 -3.2 614,029 - ABIE40_RS22410 0.40 -4.9 614,029 - ABIE40_RS22410 0.40 -3.2 614,111 - ABIE40_RS22410 0.47 -3.9 614,165 - ABIE40_RS22410 0.52 -4.2 614,225 - ABIE40_RS22410 0.57 -4.6 614,225 - ABIE40_RS22410 0.57 -4.2 614,225 - ABIE40_RS22410 0.57 -2.7 614,225 - ABIE40_RS22410 0.57 -2.2 614,225 - ABIE40_RS22410 0.57 -4.8 614,254 + ABIE40_RS22410 0.59 -3.5 614,255 - ABIE40_RS22410 0.60 -2.2 614,255 - ABIE40_RS22410 0.60 -3.7 614,255 - ABIE40_RS22410 0.60 -3.2 614,255 - ABIE40_RS22410 0.60 -4.5 614,257 + ABIE40_RS22410 0.60 -4.3 614,258 - ABIE40_RS22410 0.60 -5.2 614,338 - ABIE40_RS22410 0.67 -0.9
Or see this region's nucleotide sequence