Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS02730

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS02725 and ABIE40_RS02730 are separated by 3 nucleotidesABIE40_RS02730 and ABIE40_RS02735 are separated by 5 nucleotidesABIE40_RS02735 and ABIE40_RS02740 are separated by 119 nucleotidesABIE40_RS02740 and ABIE40_RS02745 are separated by 45 nucleotides ABIE40_RS02725: ABIE40_RS02725 - histidinol dehydrogenase, at 539,510 to 540,808 _RS02725 ABIE40_RS02730: ABIE40_RS02730 - UPF0262 family protein, at 540,812 to 541,285 _RS02730 ABIE40_RS02735: ABIE40_RS02735 - low molecular weight phosphatase family protein, at 541,291 to 541,767 _RS02735 ABIE40_RS02740: ABIE40_RS02740 - translation initiation factor IF-1, at 541,887 to 542,105 _RS02740 ABIE40_RS02745: ABIE40_RS02745 - Maf-like protein, at 542,151 to 542,771 _RS02745 Position (kb) 540 541 542Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 539.830 kb on + strand, within ABIE40_RS02725at 539.830 kb on + strand, within ABIE40_RS02725at 539.830 kb on + strand, within ABIE40_RS02725at 539.831 kb on - strand, within ABIE40_RS02725at 539.831 kb on - strand, within ABIE40_RS02725at 539.831 kb on - strand, within ABIE40_RS02725at 539.834 kb on + strand, within ABIE40_RS02725at 539.834 kb on + strand, within ABIE40_RS02725at 539.835 kb on - strand, within ABIE40_RS02725at 539.835 kb on - strand, within ABIE40_RS02725at 539.835 kb on - strand, within ABIE40_RS02725at 539.835 kb on - strand, within ABIE40_RS02725at 539.897 kb on + strand, within ABIE40_RS02725at 539.897 kb on + strand, within ABIE40_RS02725at 539.898 kb on - strand, within ABIE40_RS02725at 539.898 kb on - strand, within ABIE40_RS02725at 540.062 kb on + strand, within ABIE40_RS02725at 540.063 kb on - strand, within ABIE40_RS02725at 540.063 kb on - strand, within ABIE40_RS02725at 540.101 kb on + strand, within ABIE40_RS02725at 540.102 kb on - strand, within ABIE40_RS02725at 540.107 kb on - strand, within ABIE40_RS02725at 540.155 kb on + strand, within ABIE40_RS02725at 540.155 kb on + strand, within ABIE40_RS02725at 540.156 kb on - strand, within ABIE40_RS02725at 540.156 kb on - strand, within ABIE40_RS02725at 540.409 kb on + strand, within ABIE40_RS02725at 540.593 kb on + strand, within ABIE40_RS02725at 540.593 kb on + strand, within ABIE40_RS02725at 540.594 kb on - strand, within ABIE40_RS02725at 540.594 kb on - strand, within ABIE40_RS02725at 540.962 kb on + strand, within ABIE40_RS02730at 540.962 kb on + strand, within ABIE40_RS02730at 540.962 kb on + strand, within ABIE40_RS02730at 540.963 kb on - strand, within ABIE40_RS02730at 540.963 kb on - strand, within ABIE40_RS02730at 540.963 kb on - strand, within ABIE40_RS02730at 540.963 kb on - strand, within ABIE40_RS02730at 541.042 kb on + strand, within ABIE40_RS02730at 541.082 kb on + strand, within ABIE40_RS02730at 541.082 kb on + strand, within ABIE40_RS02730at 541.083 kb on - strand, within ABIE40_RS02730at 541.083 kb on - strand, within ABIE40_RS02730at 541.083 kb on - strand, within ABIE40_RS02730at 541.083 kb on - strand, within ABIE40_RS02730at 541.103 kb on + strand, within ABIE40_RS02730at 541.103 kb on + strand, within ABIE40_RS02730at 541.104 kb on - strand, within ABIE40_RS02730at 541.104 kb on - strand, within ABIE40_RS02730at 541.104 kb on - strand, within ABIE40_RS02730at 541.106 kb on + strand, within ABIE40_RS02730at 541.106 kb on + strand, within ABIE40_RS02730at 541.106 kb on + strand, within ABIE40_RS02730at 541.107 kb on - strand, within ABIE40_RS02730at 541.107 kb on - strand, within ABIE40_RS02730at 541.107 kb on - strand, within ABIE40_RS02730at 541.271 kb on + strandat 541.271 kb on + strandat 541.272 kb on - strandat 541.272 kb on - strandat 541.413 kb on + strand, within ABIE40_RS02735at 541.413 kb on + strand, within ABIE40_RS02735at 541.413 kb on + strand, within ABIE40_RS02735at 541.413 kb on + strand, within ABIE40_RS02735at 541.413 kb on + strand, within ABIE40_RS02735at 541.414 kb on - strand, within ABIE40_RS02735at 541.414 kb on - strand, within ABIE40_RS02735at 541.414 kb on - strand, within ABIE40_RS02735at 541.414 kb on - strand, within ABIE40_RS02735at 541.414 kb on - strand, within ABIE40_RS02735at 541.414 kb on - strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.417 kb on + strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.418 kb on - strand, within ABIE40_RS02735at 541.419 kb on + strand, within ABIE40_RS02735at 541.419 kb on + strand, within ABIE40_RS02735at 541.419 kb on + strand, within ABIE40_RS02735at 541.420 kb on - strand, within ABIE40_RS02735at 541.420 kb on - strand, within ABIE40_RS02735at 541.420 kb on - strand, within ABIE40_RS02735at 541.420 kb on - strand, within ABIE40_RS02735at 541.420 kb on - strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.421 kb on + strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.422 kb on - strand, within ABIE40_RS02735at 541.540 kb on + strand, within ABIE40_RS02735at 541.541 kb on - strand, within ABIE40_RS02735at 541.624 kb on + strand, within ABIE40_RS02735at 541.624 kb on + strand, within ABIE40_RS02735at 541.624 kb on + strand, within ABIE40_RS02735at 541.624 kb on + strand, within ABIE40_RS02735at 541.625 kb on - strand, within ABIE40_RS02735at 541.625 kb on - strand, within ABIE40_RS02735at 541.685 kb on - strand, within ABIE40_RS02735at 541.685 kb on - strand, within ABIE40_RS02735at 541.686 kb on + strand, within ABIE40_RS02735at 541.687 kb on - strand, within ABIE40_RS02735at 541.687 kb on - strand, within ABIE40_RS02735at 541.687 kb on - strand, within ABIE40_RS02735at 541.687 kb on - strand, within ABIE40_RS02735at 541.687 kb on - strand, within ABIE40_RS02735at 541.694 kb on + strand, within ABIE40_RS02735at 541.695 kb on - strand, within ABIE40_RS02735at 541.706 kb on + strand, within ABIE40_RS02735at 541.707 kb on - strand, within ABIE40_RS02735at 541.793 kb on + strandat 541.793 kb on + strandat 541.793 kb on + strandat 541.793 kb on + strandat 541.793 kb on + strandat 541.793 kb on + strandat 541.793 kb on + strandat 541.820 kb on + strandat 542.103 kb on + strandat 542.103 kb on + strandat 542.104 kb on - strandat 542.104 kb on - strandat 542.104 kb on - strandat 542.163 kb on + strandat 542.163 kb on + strandat 542.163 kb on + strandat 542.163 kb on + strandat 542.163 kb on + strandat 542.163 kb on + strandat 542.163 kb on + strandat 542.163 kb on + strandat 542.164 kb on - strandat 542.164 kb on - strandat 542.164 kb on - strandat 542.164 kb on - strandat 542.164 kb on - strandat 542.164 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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539,830 + ABIE40_RS02725 0.25 -1.1
539,830 + ABIE40_RS02725 0.25 +0.2
539,830 + ABIE40_RS02725 0.25 -4.1
539,831 - ABIE40_RS02725 0.25 -1.8
539,831 - ABIE40_RS02725 0.25 -2.7
539,831 - ABIE40_RS02725 0.25 -2.2
539,834 + ABIE40_RS02725 0.25 -1.8
539,834 + ABIE40_RS02725 0.25 -1.8
539,835 - ABIE40_RS02725 0.25 -0.8
539,835 - ABIE40_RS02725 0.25 -1.2
539,835 - ABIE40_RS02725 0.25 -4.0
539,835 - ABIE40_RS02725 0.25 -3.4
539,897 + ABIE40_RS02725 0.30 -2.9
539,897 + ABIE40_RS02725 0.30 -3.4
539,898 - ABIE40_RS02725 0.30 -2.9
539,898 - ABIE40_RS02725 0.30 -2.2
540,062 + ABIE40_RS02725 0.42 -0.8
540,063 - ABIE40_RS02725 0.43 -2.9
540,063 - ABIE40_RS02725 0.43 -2.8
540,101 + ABIE40_RS02725 0.45 -1.9
540,102 - ABIE40_RS02725 0.46 -2.4
540,107 - ABIE40_RS02725 0.46 -0.2
540,155 + ABIE40_RS02725 0.50 -1.6
540,155 + ABIE40_RS02725 0.50 -3.0
540,156 - ABIE40_RS02725 0.50 -2.9
540,156 - ABIE40_RS02725 0.50 -2.4
540,409 + ABIE40_RS02725 0.69 -2.2
540,593 + ABIE40_RS02725 0.83 -3.2
540,593 + ABIE40_RS02725 0.83 -1.6
540,594 - ABIE40_RS02725 0.83 -0.6
540,594 - ABIE40_RS02725 0.83 -3.8
540,962 + ABIE40_RS02730 0.32 -2.9
540,962 + ABIE40_RS02730 0.32 +0.8
540,962 + ABIE40_RS02730 0.32 -2.5
540,963 - ABIE40_RS02730 0.32 -1.4
540,963 - ABIE40_RS02730 0.32 -4.1
540,963 - ABIE40_RS02730 0.32 -3.7
540,963 - ABIE40_RS02730 0.32 -2.3
541,042 + ABIE40_RS02730 0.49 -4.1
541,082 + ABIE40_RS02730 0.57 -2.6
541,082 + ABIE40_RS02730 0.57 -3.0
541,083 - ABIE40_RS02730 0.57 -2.8
541,083 - ABIE40_RS02730 0.57 -3.2
541,083 - ABIE40_RS02730 0.57 -1.7
541,083 - ABIE40_RS02730 0.57 +1.8
541,103 + ABIE40_RS02730 0.61 -3.4
541,103 + ABIE40_RS02730 0.61 -3.3
541,104 - ABIE40_RS02730 0.62 -1.1
541,104 - ABIE40_RS02730 0.62 -4.7
541,104 - ABIE40_RS02730 0.62 -1.9
541,106 + ABIE40_RS02730 0.62 -3.4
541,106 + ABIE40_RS02730 0.62 -4.5
541,106 + ABIE40_RS02730 0.62 -1.2
541,107 - ABIE40_RS02730 0.62 -4.0
541,107 - ABIE40_RS02730 0.62 -3.9
541,107 - ABIE40_RS02730 0.62 -2.6
541,271 + -1.1
541,271 + -1.8
541,272 - -5.0
541,272 - -2.0
541,413 + ABIE40_RS02735 0.26 -0.1
541,413 + ABIE40_RS02735 0.26 +1.5
541,413 + ABIE40_RS02735 0.26 -0.6
541,413 + ABIE40_RS02735 0.26 -2.1
541,413 + ABIE40_RS02735 0.26 -1.0
541,414 - ABIE40_RS02735 0.26 +4.3
541,414 - ABIE40_RS02735 0.26 -1.0
541,414 - ABIE40_RS02735 0.26 -1.5
541,414 - ABIE40_RS02735 0.26 +0.2
541,414 - ABIE40_RS02735 0.26 +1.4
541,414 - ABIE40_RS02735 0.26 -0.5
541,417 + ABIE40_RS02735 0.26 -1.7
541,417 + ABIE40_RS02735 0.26 -0.3
541,417 + ABIE40_RS02735 0.26 +0.3
541,417 + ABIE40_RS02735 0.26 +0.1
541,417 + ABIE40_RS02735 0.26 +1.2
541,417 + ABIE40_RS02735 0.26 +0.3
541,417 + ABIE40_RS02735 0.26 +0.5
541,417 + ABIE40_RS02735 0.26 -0.7
541,417 + ABIE40_RS02735 0.26 +1.0
541,417 + ABIE40_RS02735 0.26 +0.6
541,417 + ABIE40_RS02735 0.26 -0.3
541,417 + ABIE40_RS02735 0.26 -0.8
541,417 + ABIE40_RS02735 0.26 +0.2
541,417 + ABIE40_RS02735 0.26 +0.8
541,418 - ABIE40_RS02735 0.27 +0.3
541,418 - ABIE40_RS02735 0.27 +0.4
541,418 - ABIE40_RS02735 0.27 -0.2
541,418 - ABIE40_RS02735 0.27 -0.1
541,418 - ABIE40_RS02735 0.27 -0.8
541,418 - ABIE40_RS02735 0.27 +0.1
541,418 - ABIE40_RS02735 0.27 +0.5
541,418 - ABIE40_RS02735 0.27 +0.4
541,418 - ABIE40_RS02735 0.27 +0.8
541,418 - ABIE40_RS02735 0.27 -0.4
541,418 - ABIE40_RS02735 0.27 -0.0
541,418 - ABIE40_RS02735 0.27 -0.7
541,419 + ABIE40_RS02735 0.27 +0.4
541,419 + ABIE40_RS02735 0.27 +0.4
541,419 + ABIE40_RS02735 0.27 -0.4
541,420 - ABIE40_RS02735 0.27 -0.5
541,420 - ABIE40_RS02735 0.27 +0.5
541,420 - ABIE40_RS02735 0.27 -0.1
541,420 - ABIE40_RS02735 0.27 +0.6
541,420 - ABIE40_RS02735 0.27 +0.4
541,421 + ABIE40_RS02735 0.27 +0.1
541,421 + ABIE40_RS02735 0.27 -0.5
541,421 + ABIE40_RS02735 0.27 +1.8
541,421 + ABIE40_RS02735 0.27 +0.4
541,421 + ABIE40_RS02735 0.27 -0.8
541,421 + ABIE40_RS02735 0.27 -1.8
541,421 + ABIE40_RS02735 0.27 +1.1
541,421 + ABIE40_RS02735 0.27 -1.2
541,421 + ABIE40_RS02735 0.27 +1.1
541,421 + ABIE40_RS02735 0.27 +0.7
541,421 + ABIE40_RS02735 0.27 -0.4
541,421 + ABIE40_RS02735 0.27 +1.2
541,421 + ABIE40_RS02735 0.27 +0.5
541,421 + ABIE40_RS02735 0.27 -0.1
541,422 - ABIE40_RS02735 0.27 +0.2
541,422 - ABIE40_RS02735 0.27 +1.0
541,422 - ABIE40_RS02735 0.27 +0.0
541,422 - ABIE40_RS02735 0.27 -1.3
541,422 - ABIE40_RS02735 0.27 +0.0
541,422 - ABIE40_RS02735 0.27 -1.1
541,422 - ABIE40_RS02735 0.27 -2.2
541,422 - ABIE40_RS02735 0.27 -0.2
541,422 - ABIE40_RS02735 0.27 +0.7
541,422 - ABIE40_RS02735 0.27 -0.2
541,422 - ABIE40_RS02735 0.27 +0.1
541,422 - ABIE40_RS02735 0.27 +0.0
541,422 - ABIE40_RS02735 0.27 -0.9
541,540 + ABIE40_RS02735 0.52 -0.1
541,541 - ABIE40_RS02735 0.52 -1.4
541,624 + ABIE40_RS02735 0.70 +1.8
541,624 + ABIE40_RS02735 0.70 +1.9
541,624 + ABIE40_RS02735 0.70 +0.3
541,624 + ABIE40_RS02735 0.70 +0.8
541,625 - ABIE40_RS02735 0.70 +0.9
541,625 - ABIE40_RS02735 0.70 +1.3
541,685 - ABIE40_RS02735 0.83 -0.4
541,685 - ABIE40_RS02735 0.83 +1.8
541,686 + ABIE40_RS02735 0.83 -0.2
541,687 - ABIE40_RS02735 0.83 +0.5
541,687 - ABIE40_RS02735 0.83 -0.1
541,687 - ABIE40_RS02735 0.83 +0.0
541,687 - ABIE40_RS02735 0.83 +0.8
541,687 - ABIE40_RS02735 0.83 -0.2
541,694 + ABIE40_RS02735 0.84 +1.9
541,695 - ABIE40_RS02735 0.85 -1.2
541,706 + ABIE40_RS02735 0.87 -0.2
541,707 - ABIE40_RS02735 0.87 +0.6
541,793 + +0.9
541,793 + -0.4
541,793 + -1.3
541,793 + +0.3
541,793 + -1.5
541,793 + +0.5
541,793 + -1.6
541,820 + -1.4
542,103 + -1.4
542,103 + +0.1
542,104 - -0.7
542,104 - +1.5
542,104 - +0.3
542,163 + -0.4
542,163 + -1.3
542,163 + -0.0
542,163 + +0.2
542,163 + +0.4
542,163 + +0.4
542,163 + -0.4
542,163 + +0.8
542,164 - +0.2
542,164 - -1.2
542,164 - +0.2
542,164 - -2.2
542,164 - -2.9
542,164 - +0.2

Or see this region's nucleotide sequence