Experiment: Glycerol (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABID97_RS03050 and ABID97_RS03055 are separated by 28 nucleotides ABID97_RS03055 and ABID97_RS03060 are separated by 105 nucleotides ABID97_RS03060 and ABID97_RS03065 are separated by 6 nucleotides ABID97_RS03065 and ABID97_RS03070 overlap by 1 nucleotides
ABID97_RS03050: ABID97_RS03050 - 4-oxalocrotonate tautomerase family protein, at 618,501 to 618,725
_RS03050
ABID97_RS03055: ABID97_RS03055 - SDR family oxidoreductase, at 618,754 to 619,500
_RS03055
ABID97_RS03060: ABID97_RS03060 - LysR substrate-binding domain-containing protein, at 619,606 to 620,517
_RS03060
ABID97_RS03065: ABID97_RS03065 - ABC transporter ATP-binding protein, at 620,524 to 621,225
_RS03065
ABID97_RS03070: ABID97_RS03070 - ABC transporter ATP-binding protein, at 621,225 to 621,971
_RS03070
Position (kb) 619
620
621 Strain fitness (log2 ratio) -2
-1
0
1 at 618.827 kb on + strand at 618.827 kb on + strand at 618.828 kb on - strand at 618.914 kb on + strand, within ABID97_RS03055 at 619.139 kb on + strand, within ABID97_RS03055 at 619.139 kb on + strand, within ABID97_RS03055 at 619.194 kb on - strand, within ABID97_RS03055 at 619.418 kb on + strand, within ABID97_RS03055 at 619.418 kb on + strand, within ABID97_RS03055 at 619.419 kb on - strand, within ABID97_RS03055 at 619.419 kb on - strand, within ABID97_RS03055 at 619.538 kb on + strand at 619.538 kb on + strand at 619.539 kb on - strand at 619.568 kb on - strand at 619.816 kb on + strand, within ABID97_RS03060 at 619.816 kb on + strand, within ABID97_RS03060 at 619.816 kb on + strand, within ABID97_RS03060 at 619.817 kb on - strand, within ABID97_RS03060 at 619.928 kb on - strand, within ABID97_RS03060 at 619.928 kb on - strand, within ABID97_RS03060 at 619.928 kb on - strand, within ABID97_RS03060 at 620.134 kb on + strand, within ABID97_RS03060 at 620.135 kb on - strand, within ABID97_RS03060 at 620.281 kb on + strand, within ABID97_RS03060 at 620.282 kb on - strand, within ABID97_RS03060 at 620.282 kb on - strand, within ABID97_RS03060 at 620.431 kb on + strand at 620.431 kb on + strand at 621.077 kb on + strand, within ABID97_RS03065 at 621.195 kb on - strand at 621.197 kb on + strand at 621.197 kb on + strand at 621.197 kb on + strand at 621.198 kb on - strand at 621.198 kb on - strand at 621.245 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Glycerol (C) remove 618,827 + -0.2 618,827 + +0.3 618,828 - -0.1 618,914 + ABID97_RS03055 0.21 -0.3 619,139 + ABID97_RS03055 0.52 +1.2 619,139 + ABID97_RS03055 0.52 -1.9 619,194 - ABID97_RS03055 0.59 +0.3 619,418 + ABID97_RS03055 0.89 +0.3 619,418 + ABID97_RS03055 0.89 +0.5 619,419 - ABID97_RS03055 0.89 -0.2 619,419 - ABID97_RS03055 0.89 +0.5 619,538 + +0.1 619,538 + +1.6 619,539 - +0.0 619,568 - -0.0 619,816 + ABID97_RS03060 0.23 +0.0 619,816 + ABID97_RS03060 0.23 -0.3 619,816 + ABID97_RS03060 0.23 +0.0 619,817 - ABID97_RS03060 0.23 -0.1 619,928 - ABID97_RS03060 0.35 -0.4 619,928 - ABID97_RS03060 0.35 -0.3 619,928 - ABID97_RS03060 0.35 -0.2 620,134 + ABID97_RS03060 0.58 -0.3 620,135 - ABID97_RS03060 0.58 -0.3 620,281 + ABID97_RS03060 0.74 -0.2 620,282 - ABID97_RS03060 0.74 -0.4 620,282 - ABID97_RS03060 0.74 -0.1 620,431 + +0.2 620,431 + -0.1 621,077 + ABID97_RS03065 0.79 +0.4 621,195 - -0.2 621,197 + -0.3 621,197 + +0.0 621,197 + +0.7 621,198 - -0.5 621,198 - -0.5 621,245 - -0.3
Or see this region's nucleotide sequence