Experiment: L-Tryptophan (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PfGW456L13_1582 and PfGW456L13_1583 are separated by 0 nucleotides PfGW456L13_1583 and PfGW456L13_1584 overlap by 7 nucleotides PfGW456L13_1584 and PfGW456L13_1585 overlap by 20 nucleotides PfGW456L13_1585 and PfGW456L13_1586 are separated by 197 nucleotides
PfGW456L13_1582 - Peptide chain release factor 1, at 1,747,034 to 1,748,116
_1582
PfGW456L13_1583 - Protein-N(5)-glutamine methyltransferase PrmC, methylates polypeptide chain release factors RF1 and RF2, at 1,748,117 to 1,748,947
_1583
PfGW456L13_1584 - Molybdopterin biosynthesis protein MoeB, at 1,748,941 to 1,749,696
_1584
PfGW456L13_1585 - Glutamate racemase (EC 5.1.1.3), at 1,749,677 to 1,750,480
_1585
PfGW456L13_1586 - Lipid A 3-O-deacylase, at 1,750,678 to 1,751,121
_1586
Position (kb)
1748
1749
1750 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1748.106 kb on + strand at 1748.107 kb on - strand at 1748.107 kb on - strand at 1748.107 kb on - strand at 1748.114 kb on + strand at 1748.114 kb on + strand at 1748.114 kb on + strand at 1748.114 kb on + strand at 1748.114 kb on + strand at 1748.114 kb on + strand at 1748.968 kb on + strand at 1749.035 kb on + strand, within PfGW456L13_1584 at 1749.079 kb on + strand, within PfGW456L13_1584 at 1749.079 kb on + strand, within PfGW456L13_1584 at 1749.079 kb on + strand, within PfGW456L13_1584 at 1749.454 kb on + strand, within PfGW456L13_1584 at 1749.464 kb on + strand, within PfGW456L13_1584 at 1750.447 kb on + strand at 1750.447 kb on + strand at 1750.447 kb on + strand at 1750.447 kb on + strand at 1750.447 kb on + strand at 1750.447 kb on + strand at 1750.447 kb on + strand at 1750.448 kb on - strand at 1750.448 kb on - strand at 1750.448 kb on - strand at 1750.448 kb on - strand at 1750.478 kb on + strand at 1750.478 kb on + strand at 1750.478 kb on + strand at 1750.478 kb on + strand at 1750.478 kb on + strand at 1750.478 kb on + strand at 1750.479 kb on - strand at 1750.479 kb on - strand at 1750.525 kb on - strand at 1750.525 kb on - strand at 1750.539 kb on + strand at 1750.542 kb on - strand at 1750.573 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Tryptophan (C) remove 1,748,106 + +1.7 1,748,107 - -0.2 1,748,107 - +2.1 1,748,107 - +1.4 1,748,114 + +0.1 1,748,114 + -1.7 1,748,114 + +0.5 1,748,114 + +1.6 1,748,114 + +1.2 1,748,114 + -1.1 1,748,968 + -1.4 1,749,035 + PfGW456L13_1584 0.12 -1.7 1,749,079 + PfGW456L13_1584 0.18 -5.4 1,749,079 + PfGW456L13_1584 0.18 -4.4 1,749,079 + PfGW456L13_1584 0.18 -2.9 1,749,454 + PfGW456L13_1584 0.68 -2.3 1,749,464 + PfGW456L13_1584 0.69 -2.6 1,750,447 + +0.1 1,750,447 + -0.7 1,750,447 + -0.4 1,750,447 + +1.4 1,750,447 + +0.8 1,750,447 + -0.1 1,750,447 + +1.1 1,750,448 - -0.7 1,750,448 - +0.8 1,750,448 - +0.9 1,750,448 - -0.7 1,750,478 + +0.5 1,750,478 + -0.5 1,750,478 + -0.3 1,750,478 + +0.5 1,750,478 + -1.6 1,750,478 + +0.8 1,750,479 - -1.8 1,750,479 - +0.2 1,750,525 - +0.9 1,750,525 - +0.1 1,750,539 + +1.6 1,750,542 - -1.7 1,750,573 + +0.1
Or see this region's nucleotide sequence