Strain Fitness in Rhizobium sp. OAE497 around ABIE40_RS22410

Experiment: D-Glucose-6-Phosphate (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntABIE40_RS22400 and ABIE40_RS22405 are separated by 51 nucleotidesABIE40_RS22405 and ABIE40_RS22410 are separated by 211 nucleotidesABIE40_RS22410 and ABIE40_RS22415 are separated by 53 nucleotides ABIE40_RS22400: ABIE40_RS22400 - mannonate dehydratase, at 611,382 to 612,569 _RS22400 ABIE40_RS22405: ABIE40_RS22405 - GntR family transcriptional regulator, at 612,621 to 613,343 _RS22405 ABIE40_RS22410: ABIE40_RS22410 - extracellular solute-binding protein, at 613,555 to 614,730 _RS22410 ABIE40_RS22415: ABIE40_RS22415 - ABC transporter ATP-binding protein, at 614,784 to 615,890 _RS22415 Position (kb) 613 614 615Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 612.749 kb on + strand, within ABIE40_RS22405at 612.749 kb on + strand, within ABIE40_RS22405at 612.826 kb on - strand, within ABIE40_RS22405at 612.826 kb on - strand, within ABIE40_RS22405at 612.974 kb on + strand, within ABIE40_RS22405at 613.103 kb on + strand, within ABIE40_RS22405at 613.104 kb on - strand, within ABIE40_RS22405at 613.237 kb on + strand, within ABIE40_RS22405at 613.237 kb on + strand, within ABIE40_RS22405at 613.347 kb on - strandat 613.347 kb on - strandat 613.347 kb on - strandat 613.376 kb on - strandat 613.378 kb on + strandat 613.383 kb on + strandat 613.723 kb on + strand, within ABIE40_RS22410at 613.723 kb on + strand, within ABIE40_RS22410at 613.723 kb on + strand, within ABIE40_RS22410at 613.723 kb on + strand, within ABIE40_RS22410at 613.724 kb on - strand, within ABIE40_RS22410at 613.724 kb on - strand, within ABIE40_RS22410at 613.724 kb on - strand, within ABIE40_RS22410at 613.999 kb on + strand, within ABIE40_RS22410at 613.999 kb on + strand, within ABIE40_RS22410at 613.999 kb on + strand, within ABIE40_RS22410at 613.999 kb on + strand, within ABIE40_RS22410at 613.999 kb on + strand, within ABIE40_RS22410at 613.999 kb on + strand, within ABIE40_RS22410at 614.000 kb on - strand, within ABIE40_RS22410at 614.000 kb on - strand, within ABIE40_RS22410at 614.000 kb on - strand, within ABIE40_RS22410at 614.000 kb on - strand, within ABIE40_RS22410at 614.000 kb on - strand, within ABIE40_RS22410at 614.000 kb on - strand, within ABIE40_RS22410at 614.026 kb on + strand, within ABIE40_RS22410at 614.026 kb on + strand, within ABIE40_RS22410at 614.026 kb on + strand, within ABIE40_RS22410at 614.027 kb on - strand, within ABIE40_RS22410at 614.028 kb on + strand, within ABIE40_RS22410at 614.028 kb on + strand, within ABIE40_RS22410at 614.028 kb on + strand, within ABIE40_RS22410at 614.029 kb on - strand, within ABIE40_RS22410at 614.029 kb on - strand, within ABIE40_RS22410at 614.111 kb on - strand, within ABIE40_RS22410at 614.165 kb on - strand, within ABIE40_RS22410at 614.225 kb on - strand, within ABIE40_RS22410at 614.225 kb on - strand, within ABIE40_RS22410at 614.225 kb on - strand, within ABIE40_RS22410at 614.225 kb on - strand, within ABIE40_RS22410at 614.225 kb on - strand, within ABIE40_RS22410at 614.254 kb on + strand, within ABIE40_RS22410at 614.255 kb on - strand, within ABIE40_RS22410at 614.255 kb on - strand, within ABIE40_RS22410at 614.255 kb on - strand, within ABIE40_RS22410at 614.255 kb on - strand, within ABIE40_RS22410at 614.257 kb on + strand, within ABIE40_RS22410at 614.258 kb on - strand, within ABIE40_RS22410at 614.338 kb on - strand, within ABIE40_RS22410at 614.422 kb on + strand, within ABIE40_RS22410at 614.423 kb on - strand, within ABIE40_RS22410at 614.485 kb on + strand, within ABIE40_RS22410at 614.485 kb on + strand, within ABIE40_RS22410at 614.485 kb on + strand, within ABIE40_RS22410at 614.485 kb on + strand, within ABIE40_RS22410at 614.486 kb on - strand, within ABIE40_RS22410at 614.486 kb on - strand, within ABIE40_RS22410at 614.486 kb on - strand, within ABIE40_RS22410at 614.486 kb on - strand, within ABIE40_RS22410at 614.623 kb on + strandat 614.623 kb on + strandat 614.623 kb on + strandat 614.623 kb on + strandat 614.623 kb on + strandat 614.624 kb on - strandat 614.783 kb on + strandat 614.783 kb on + strandat 614.783 kb on + strandat 614.783 kb on + strandat 614.783 kb on + strandat 614.784 kb on - strandat 614.784 kb on - strandat 614.784 kb on - strandat 614.784 kb on - strandat 614.784 kb on - strandat 614.784 kb on - strandat 614.883 kb on + strandat 614.884 kb on - strandat 614.884 kb on - strandat 614.885 kb on + strandat 614.886 kb on - strandat 614.981 kb on + strand, within ABIE40_RS22415at 614.981 kb on + strand, within ABIE40_RS22415at 614.981 kb on + strand, within ABIE40_RS22415at 614.982 kb on - strand, within ABIE40_RS22415at 614.982 kb on - strand, within ABIE40_RS22415at 614.982 kb on - strand, within ABIE40_RS22415at 615.087 kb on + strand, within ABIE40_RS22415at 615.088 kb on - strand, within ABIE40_RS22415at 615.088 kb on - strand, within ABIE40_RS22415at 615.088 kb on - strand, within ABIE40_RS22415at 615.088 kb on - strand, within ABIE40_RS22415at 615.088 kb on - strand, within ABIE40_RS22415at 615.104 kb on + strand, within ABIE40_RS22415at 615.104 kb on + strand, within ABIE40_RS22415at 615.105 kb on - strand, within ABIE40_RS22415at 615.402 kb on + strand, within ABIE40_RS22415at 615.403 kb on - strand, within ABIE40_RS22415at 615.403 kb on - strand, within ABIE40_RS22415at 615.470 kb on + strand, within ABIE40_RS22415at 615.501 kb on + strand, within ABIE40_RS22415at 615.502 kb on - strand, within ABIE40_RS22415at 615.502 kb on - strand, within ABIE40_RS22415at 615.536 kb on + strand, within ABIE40_RS22415

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose-6-Phosphate (C)
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612,749 + ABIE40_RS22405 0.18 +4.0
612,749 + ABIE40_RS22405 0.18 +1.9
612,826 - ABIE40_RS22405 0.28 +3.6
612,826 - ABIE40_RS22405 0.28 +3.6
612,974 + ABIE40_RS22405 0.49 +1.5
613,103 + ABIE40_RS22405 0.67 +3.1
613,104 - ABIE40_RS22405 0.67 +2.4
613,237 + ABIE40_RS22405 0.85 +3.0
613,237 + ABIE40_RS22405 0.85 +3.3
613,347 - +2.4
613,347 - +2.4
613,347 - +1.9
613,376 - -2.1
613,378 + -2.5
613,383 + -3.2
613,723 + ABIE40_RS22410 0.14 -2.2
613,723 + ABIE40_RS22410 0.14 -3.6
613,723 + ABIE40_RS22410 0.14 -2.8
613,723 + ABIE40_RS22410 0.14 -0.1
613,724 - ABIE40_RS22410 0.14 -0.3
613,724 - ABIE40_RS22410 0.14 +1.9
613,724 - ABIE40_RS22410 0.14 -3.2
613,999 + ABIE40_RS22410 0.38 -3.1
613,999 + ABIE40_RS22410 0.38 -2.6
613,999 + ABIE40_RS22410 0.38 -3.6
613,999 + ABIE40_RS22410 0.38 -3.4
613,999 + ABIE40_RS22410 0.38 -3.5
613,999 + ABIE40_RS22410 0.38 -4.1
614,000 - ABIE40_RS22410 0.38 -3.1
614,000 - ABIE40_RS22410 0.38 -2.4
614,000 - ABIE40_RS22410 0.38 -1.6
614,000 - ABIE40_RS22410 0.38 -1.9
614,000 - ABIE40_RS22410 0.38 -0.3
614,000 - ABIE40_RS22410 0.38 -2.6
614,026 + ABIE40_RS22410 0.40 -3.8
614,026 + ABIE40_RS22410 0.40 -1.7
614,026 + ABIE40_RS22410 0.40 -0.6
614,027 - ABIE40_RS22410 0.40 -3.8
614,028 + ABIE40_RS22410 0.40 -3.2
614,028 + ABIE40_RS22410 0.40 -4.1
614,028 + ABIE40_RS22410 0.40 -3.0
614,029 - ABIE40_RS22410 0.40 -4.7
614,029 - ABIE40_RS22410 0.40 -3.0
614,111 - ABIE40_RS22410 0.47 -3.7
614,165 - ABIE40_RS22410 0.52 -5.0
614,225 - ABIE40_RS22410 0.57 -3.8
614,225 - ABIE40_RS22410 0.57 -2.4
614,225 - ABIE40_RS22410 0.57 -2.5
614,225 - ABIE40_RS22410 0.57 -1.9
614,225 - ABIE40_RS22410 0.57 -2.9
614,254 + ABIE40_RS22410 0.59 -2.3
614,255 - ABIE40_RS22410 0.60 -2.9
614,255 - ABIE40_RS22410 0.60 -3.5
614,255 - ABIE40_RS22410 0.60 -5.0
614,255 - ABIE40_RS22410 0.60 -4.2
614,257 + ABIE40_RS22410 0.60 -4.0
614,258 - ABIE40_RS22410 0.60 -3.4
614,338 - ABIE40_RS22410 0.67 -2.3
614,422 + ABIE40_RS22410 0.74 -3.0
614,423 - ABIE40_RS22410 0.74 -3.0
614,485 + ABIE40_RS22410 0.79 -1.7
614,485 + ABIE40_RS22410 0.79 -3.0
614,485 + ABIE40_RS22410 0.79 -4.1
614,485 + ABIE40_RS22410 0.79 -1.5
614,486 - ABIE40_RS22410 0.79 -1.8
614,486 - ABIE40_RS22410 0.79 -3.3
614,486 - ABIE40_RS22410 0.79 -0.6
614,486 - ABIE40_RS22410 0.79 -0.6
614,623 + -2.8
614,623 + +0.2
614,623 + -2.3
614,623 + -1.1
614,623 + -1.8
614,624 - -2.4
614,783 + -1.4
614,783 + -0.6
614,783 + -2.7
614,783 + -1.0
614,783 + +0.6
614,784 - -2.8
614,784 - -2.6
614,784 - -2.0
614,784 - -5.0
614,784 - -4.1
614,784 - -5.2
614,883 + -2.4
614,884 - -2.6
614,884 - -3.3
614,885 + -2.0
614,886 - -0.6
614,981 + ABIE40_RS22415 0.18 -2.3
614,981 + ABIE40_RS22415 0.18 -1.2
614,981 + ABIE40_RS22415 0.18 -1.6
614,982 - ABIE40_RS22415 0.18 -1.8
614,982 - ABIE40_RS22415 0.18 -2.9
614,982 - ABIE40_RS22415 0.18 -2.2
615,087 + ABIE40_RS22415 0.27 -2.0
615,088 - ABIE40_RS22415 0.27 -4.1
615,088 - ABIE40_RS22415 0.27 -2.1
615,088 - ABIE40_RS22415 0.27 -3.5
615,088 - ABIE40_RS22415 0.27 -3.8
615,088 - ABIE40_RS22415 0.27 -1.5
615,104 + ABIE40_RS22415 0.29 -4.2
615,104 + ABIE40_RS22415 0.29 -3.2
615,105 - ABIE40_RS22415 0.29 -2.8
615,402 + ABIE40_RS22415 0.56 -2.8
615,403 - ABIE40_RS22415 0.56 -3.8
615,403 - ABIE40_RS22415 0.56 -2.3
615,470 + ABIE40_RS22415 0.62 -4.0
615,501 + ABIE40_RS22415 0.65 -3.8
615,502 - ABIE40_RS22415 0.65 -4.4
615,502 - ABIE40_RS22415 0.65 +2.2
615,536 + ABIE40_RS22415 0.68 -3.4

Or see this region's nucleotide sequence