Experiment: L-Phenylalanine (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BPHYT_RS09570 and BPHYT_RS09575 are separated by 70 nucleotides BPHYT_RS09575 and BPHYT_RS09580 are separated by 178 nucleotides BPHYT_RS09580 and BPHYT_RS09585 are separated by 218 nucleotides
BPHYT_RS09570: BPHYT_RS09570 - Water stress and Hypersensitive response domain-containing protein, at 2,172,504 to 2,173,007
_RS09570
BPHYT_RS09575: BPHYT_RS09575 - hypothetical protein, at 2,173,078 to 2,173,452
_RS09575
BPHYT_RS09580: BPHYT_RS09580 - 2-aminoadipate aminotransferase, at 2,173,631 to 2,175,127
_RS09580
BPHYT_RS09585: BPHYT_RS09585 - hypothetical protein, at 2,175,346 to 2,175,762
_RS09585
Position (kb)
2173
2174
2175
2176 Strain fitness (log2 ratio)
-1
0
1 at 2172.959 kb on + strand at 2173.592 kb on + strand at 2173.593 kb on - strand at 2173.607 kb on - strand at 2173.631 kb on - strand at 2173.827 kb on - strand, within BPHYT_RS09580 at 2173.878 kb on - strand, within BPHYT_RS09580 at 2174.058 kb on - strand, within BPHYT_RS09580 at 2174.058 kb on - strand, within BPHYT_RS09580 at 2175.167 kb on + strand at 2175.167 kb on + strand at 2175.260 kb on + strand at 2175.261 kb on - strand at 2175.267 kb on - strand at 2175.267 kb on - strand at 2175.286 kb on - strand at 2175.286 kb on - strand at 2175.413 kb on + strand, within BPHYT_RS09585 at 2175.621 kb on + strand at 2175.715 kb on + strand, within BPHYT_RS09585 at 2175.832 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine (C) remove 2,172,959 + +0.5 2,173,592 + -0.3 2,173,593 - -0.0 2,173,607 - +0.4 2,173,631 - +0.5 2,173,827 - BPHYT_RS09580 0.13 -0.6 2,173,878 - BPHYT_RS09580 0.16 -0.1 2,174,058 - BPHYT_RS09580 0.29 -0.0 2,174,058 - BPHYT_RS09580 0.29 -0.0 2,175,167 + +0.7 2,175,167 + +0.4 2,175,260 + -0.9 2,175,261 - -0.5 2,175,267 - +0.8 2,175,267 - -0.3 2,175,286 - -0.4 2,175,286 - +0.1 2,175,413 + BPHYT_RS09585 0.16 -1.5 2,175,621 + +1.0 2,175,715 + BPHYT_RS09585 0.88 -0.4 2,175,832 + +1.4
Or see this region's nucleotide sequence