Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS26445 and RR42_RS26450 are separated by 12 nucleotides RR42_RS26450 and RR42_RS26455 are separated by 44 nucleotides RR42_RS26455 and RR42_RS26460 are separated by 46 nucleotides
RR42_RS26445: RR42_RS26445 - ABC transporter permease, at 1,289,116 to 1,290,000
_RS26445
RR42_RS26450: RR42_RS26450 - histidinol dehydrogenase, at 1,290,013 to 1,290,723
_RS26450
RR42_RS26455: RR42_RS26455 - amino acid ABC transporter ATP-binding protein, at 1,290,768 to 1,291,544
_RS26455
RR42_RS26460: RR42_RS26460 - ABC transporter permease, at 1,291,591 to 1,292,775
_RS26460
Position (kb)
1290
1291
1292 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1289.799 kb on - strand, within RR42_RS26445 at 1289.881 kb on - strand, within RR42_RS26445 at 1289.881 kb on - strand, within RR42_RS26445 at 1289.928 kb on - strand at 1289.928 kb on - strand at 1289.984 kb on - strand at 1290.014 kb on + strand at 1290.105 kb on - strand, within RR42_RS26450 at 1290.164 kb on + strand, within RR42_RS26450 at 1290.366 kb on - strand, within RR42_RS26450 at 1290.366 kb on - strand, within RR42_RS26450 at 1290.695 kb on + strand at 1290.696 kb on - strand at 1290.808 kb on + strand at 1290.809 kb on - strand at 1290.809 kb on - strand at 1290.809 kb on - strand at 1290.809 kb on - strand at 1290.809 kb on - strand at 1290.809 kb on - strand at 1290.956 kb on + strand, within RR42_RS26455 at 1291.664 kb on + strand at 1291.721 kb on + strand, within RR42_RS26460 at 1291.979 kb on + strand, within RR42_RS26460 at 1291.980 kb on - strand, within RR42_RS26460 at 1291.980 kb on - strand, within RR42_RS26460 at 1291.980 kb on - strand, within RR42_RS26460 at 1292.279 kb on + strand, within RR42_RS26460 at 1292.294 kb on + strand, within RR42_RS26460 at 1292.294 kb on + strand, within RR42_RS26460 at 1292.295 kb on - strand, within RR42_RS26460 at 1292.434 kb on - strand, within RR42_RS26460
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 1,289,799 - RR42_RS26445 0.77 +1.3 1,289,881 - RR42_RS26445 0.86 -0.1 1,289,881 - RR42_RS26445 0.86 +2.1 1,289,928 - +0.1 1,289,928 - +1.1 1,289,984 - -0.1 1,290,014 + -0.7 1,290,105 - RR42_RS26450 0.13 +1.3 1,290,164 + RR42_RS26450 0.21 -1.0 1,290,366 - RR42_RS26450 0.50 -0.5 1,290,366 - RR42_RS26450 0.50 -1.6 1,290,695 + +0.4 1,290,696 - +0.0 1,290,808 + -0.9 1,290,809 - +1.1 1,290,809 - +1.3 1,290,809 - +0.2 1,290,809 - -0.3 1,290,809 - +1.2 1,290,809 - -0.2 1,290,956 + RR42_RS26455 0.24 -1.2 1,291,664 + +1.3 1,291,721 + RR42_RS26460 0.11 +1.1 1,291,979 + RR42_RS26460 0.33 +1.3 1,291,980 - RR42_RS26460 0.33 +0.4 1,291,980 - RR42_RS26460 0.33 +0.7 1,291,980 - RR42_RS26460 0.33 -0.1 1,292,279 + RR42_RS26460 0.58 -0.6 1,292,294 + RR42_RS26460 0.59 -2.6 1,292,294 + RR42_RS26460 0.59 +1.3 1,292,295 - RR42_RS26460 0.59 +0.3 1,292,434 - RR42_RS26460 0.71 -2.3
Or see this region's nucleotide sequence