Experiment: R2A with Vancomycin 0.5 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RR42_RS24580 and RR42_RS24585 are separated by 77 nucleotides RR42_RS24585 and RR42_RS24590 are separated by 62 nucleotides
RR42_RS24580: RR42_RS24580 - hypothetical protein, at 847,454 to 848,818
_RS24580
RR42_RS24585: RR42_RS24585 - hypothetical protein, at 848,896 to 850,731
_RS24585
RR42_RS24590: RR42_RS24590 - RND transporter, at 850,794 to 853,154
_RS24590
Position (kb) 848
849
850
851 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 847.943 kb on + strand, within RR42_RS24580 at 847.943 kb on + strand, within RR42_RS24580 at 847.943 kb on + strand, within RR42_RS24580 at 847.943 kb on + strand, within RR42_RS24580 at 847.944 kb on - strand, within RR42_RS24580 at 847.945 kb on + strand, within RR42_RS24580 at 847.945 kb on + strand, within RR42_RS24580 at 847.945 kb on + strand, within RR42_RS24580 at 847.945 kb on + strand, within RR42_RS24580 at 847.946 kb on - strand, within RR42_RS24580 at 847.946 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 847.950 kb on - strand, within RR42_RS24580 at 848.177 kb on + strand, within RR42_RS24580 at 848.178 kb on - strand, within RR42_RS24580 at 848.204 kb on + strand, within RR42_RS24580 at 848.204 kb on + strand, within RR42_RS24580 at 848.205 kb on - strand, within RR42_RS24580 at 848.207 kb on + strand, within RR42_RS24580 at 848.286 kb on - strand, within RR42_RS24580 at 848.372 kb on + strand, within RR42_RS24580 at 848.372 kb on + strand, within RR42_RS24580 at 848.390 kb on + strand, within RR42_RS24580 at 848.391 kb on - strand, within RR42_RS24580 at 848.391 kb on - strand, within RR42_RS24580 at 848.391 kb on - strand, within RR42_RS24580 at 848.534 kb on + strand, within RR42_RS24580 at 848.535 kb on - strand, within RR42_RS24580 at 848.535 kb on - strand, within RR42_RS24580 at 848.576 kb on + strand, within RR42_RS24580 at 848.576 kb on + strand, within RR42_RS24580 at 848.577 kb on - strand, within RR42_RS24580 at 848.672 kb on + strand, within RR42_RS24580 at 848.672 kb on + strand, within RR42_RS24580 at 848.694 kb on - strand at 848.968 kb on + strand at 848.969 kb on - strand at 849.020 kb on + strand at 849.176 kb on - strand, within RR42_RS24585 at 849.184 kb on + strand, within RR42_RS24585 at 849.262 kb on + strand, within RR42_RS24585 at 849.370 kb on - strand, within RR42_RS24585 at 849.580 kb on + strand, within RR42_RS24585 at 849.580 kb on + strand, within RR42_RS24585 at 849.581 kb on - strand, within RR42_RS24585 at 849.889 kb on + strand, within RR42_RS24585 at 849.889 kb on + strand, within RR42_RS24585 at 849.890 kb on - strand, within RR42_RS24585 at 849.926 kb on - strand, within RR42_RS24585 at 849.926 kb on - strand, within RR42_RS24585 at 849.938 kb on - strand, within RR42_RS24585 at 849.994 kb on + strand, within RR42_RS24585 at 850.020 kb on + strand, within RR42_RS24585 at 850.109 kb on - strand, within RR42_RS24585 at 850.232 kb on - strand, within RR42_RS24585 at 850.295 kb on - strand, within RR42_RS24585 at 850.298 kb on - strand, within RR42_RS24585 at 850.471 kb on + strand, within RR42_RS24585 at 850.472 kb on - strand, within RR42_RS24585 at 850.472 kb on - strand, within RR42_RS24585 at 850.472 kb on - strand, within RR42_RS24585 at 850.534 kb on + strand, within RR42_RS24585 at 850.542 kb on + strand, within RR42_RS24585 at 850.564 kb on + strand at 850.564 kb on + strand at 850.565 kb on - strand at 850.565 kb on - strand at 850.565 kb on - strand at 850.594 kb on + strand at 850.684 kb on + strand at 850.776 kb on - strand at 850.776 kb on - strand at 850.953 kb on + strand at 850.953 kb on + strand at 850.953 kb on + strand at 850.954 kb on - strand at 850.954 kb on - strand at 851.091 kb on + strand, within RR42_RS24590 at 851.255 kb on + strand, within RR42_RS24590 at 851.358 kb on + strand, within RR42_RS24590 at 851.358 kb on + strand, within RR42_RS24590 at 851.359 kb on - strand, within RR42_RS24590
Per-strain Table
Position Strand Gene LocusTag Fraction R2A with Vancomycin 0.5 mg/ml remove 847,943 + RR42_RS24580 0.36 +0.5 847,943 + RR42_RS24580 0.36 +0.9 847,943 + RR42_RS24580 0.36 +1.1 847,943 + RR42_RS24580 0.36 +1.4 847,944 - RR42_RS24580 0.36 -1.9 847,945 + RR42_RS24580 0.36 -0.1 847,945 + RR42_RS24580 0.36 -0.3 847,945 + RR42_RS24580 0.36 +0.6 847,945 + RR42_RS24580 0.36 -0.5 847,946 - RR42_RS24580 0.36 -0.8 847,946 - RR42_RS24580 0.36 +0.8 847,950 - RR42_RS24580 0.36 +0.2 847,950 - RR42_RS24580 0.36 -0.1 847,950 - RR42_RS24580 0.36 -0.1 847,950 - RR42_RS24580 0.36 -0.3 847,950 - RR42_RS24580 0.36 -1.3 848,177 + RR42_RS24580 0.53 -1.9 848,178 - RR42_RS24580 0.53 +1.0 848,204 + RR42_RS24580 0.55 +0.1 848,204 + RR42_RS24580 0.55 +0.4 848,205 - RR42_RS24580 0.55 -0.4 848,207 + RR42_RS24580 0.55 -2.3 848,286 - RR42_RS24580 0.61 +0.6 848,372 + RR42_RS24580 0.67 -0.2 848,372 + RR42_RS24580 0.67 -0.8 848,390 + RR42_RS24580 0.69 +1.3 848,391 - RR42_RS24580 0.69 +1.3 848,391 - RR42_RS24580 0.69 -0.3 848,391 - RR42_RS24580 0.69 +0.3 848,534 + RR42_RS24580 0.79 -0.0 848,535 - RR42_RS24580 0.79 -0.5 848,535 - RR42_RS24580 0.79 -0.7 848,576 + RR42_RS24580 0.82 +0.5 848,576 + RR42_RS24580 0.82 +1.0 848,577 - RR42_RS24580 0.82 -0.7 848,672 + RR42_RS24580 0.89 -0.4 848,672 + RR42_RS24580 0.89 -0.1 848,694 - +1.0 848,968 + -0.4 848,969 - +1.1 849,020 + +0.7 849,176 - RR42_RS24585 0.15 +0.4 849,184 + RR42_RS24585 0.16 +0.0 849,262 + RR42_RS24585 0.20 +0.1 849,370 - RR42_RS24585 0.26 +0.2 849,580 + RR42_RS24585 0.37 +0.0 849,580 + RR42_RS24585 0.37 -0.3 849,581 - RR42_RS24585 0.37 -1.6 849,889 + RR42_RS24585 0.54 +0.2 849,889 + RR42_RS24585 0.54 -0.1 849,890 - RR42_RS24585 0.54 -1.5 849,926 - RR42_RS24585 0.56 -0.8 849,926 - RR42_RS24585 0.56 -0.8 849,938 - RR42_RS24585 0.57 -1.0 849,994 + RR42_RS24585 0.60 -0.5 850,020 + RR42_RS24585 0.61 +0.2 850,109 - RR42_RS24585 0.66 -1.3 850,232 - RR42_RS24585 0.73 -1.0 850,295 - RR42_RS24585 0.76 -0.9 850,298 - RR42_RS24585 0.76 +0.6 850,471 + RR42_RS24585 0.86 +0.2 850,472 - RR42_RS24585 0.86 -0.3 850,472 - RR42_RS24585 0.86 -1.4 850,472 - RR42_RS24585 0.86 -1.7 850,534 + RR42_RS24585 0.89 +0.2 850,542 + RR42_RS24585 0.90 -0.6 850,564 + -0.2 850,564 + -1.3 850,565 - -0.8 850,565 - +1.0 850,565 - -0.5 850,594 + +0.1 850,684 + -0.5 850,776 - -3.1 850,776 - -0.1 850,953 + +2.8 850,953 + +0.8 850,953 + +0.0 850,954 - +0.1 850,954 - +1.7 851,091 + RR42_RS24590 0.13 -1.2 851,255 + RR42_RS24590 0.20 -0.7 851,358 + RR42_RS24590 0.24 +0.2 851,358 + RR42_RS24590 0.24 -0.1 851,359 - RR42_RS24590 0.24 +0.6
Or see this region's nucleotide sequence